Measurement of the Infection and Dissemination of Bluetongue Virus in Culicoides Biting Midges Using a Semi-Quantitative RT-PCR Assay and Isolation of Infectious Virus

Background Culicoides biting midges (Diptera: Ceratopogonidae) are the biological vectors of globally significant arboviruses of livestock including bluetongue virus (BTV), African horse sickness virus (AHSV) and the recently emerging Schmallenberg virus (SBV). From 2006–2009 outbreaks of BTV in northern Europe inflicted major disruption and economic losses to farmers and several attempts were made to implicate Palaearctic Culicoides species as vectors. Results from these studies were difficult to interpret as they used semi-quantitative RT-PCR (sqPCR) assays as the major diagnostic tool, a technique that had not been validated for use in this role. In this study we validate the use of these assays by carrying out time-series detection of BTV RNA in two colony species of Culicoides and compare the results with the more traditional isolation of infectious BTV on cell culture. Methodology/Principal Findings A BTV serotype 1 strain mixed with horse blood was fed to several hundred individuals of Culicoides sonorensis (Wirth & Jones) and C. nubeculosus (Mg.) using a membrane-based assay and replete individuals were then incubated at 25°C. At daily intervals 25 Culicoides of each species were removed from incubation, homogenised and BTV quantified in each individual using sqPCR (Cq values) and virus isolation on a KC-C. sonorensis embryonic cell line, followed by antigen enzyme-linked immunosorbent assay (ELISA). In addition, comparisons were also drawn between the results obtained with whole C. sonorensis and with individually dissected individuals to determine the level of BTV dissemination. Conclusions/Significance Cq values generated from time-series infection experiments in both C. sonorensis and C. nubeculosus confirmed previous studies that relied upon the isolation and detection of infectious BTV. Implications on the testing of field-collected Culicoides as potential virus vectors by PCR assays and the use of such assays as front-line tools for use in diagnostic laboratories in this role are discussed.


Introduction
In 2006, bluetongue virus (BTV) emerged in northern Europe for the first time in recorded history, inflicting severe economic damage on the livestock sector in this region [1,2]. The transmission of BTV occurs primarily by a biological, propagative cycle in competent Culicoides biting midges [3,4]. Risk of BTV emergence in new regions is hence, in part, assessed by the seasonal and/or spatial presence or absence of adult Culicoides and the strength of evidence implicating the species present as a transmission threat. Prior to the incursion of BTV into northern Europe, clear evidence existed that some Culicoides species present in this region were capable of transmitting at least some strains of BTV [1]. The most likely potential vectors were the C. obsoletus group (more correctly, those species placed within the Avaritia subgenus in this region: Culicoides obsoletus Meigen, Culicoides scoticus Downes & Kettle, Culicoides dewulfi Goetghebuer and Culicoides chiopterus Meigen). Some of these species had already been implicated in BTV transmission in southern Europe by one or more of: (a) isolation of BTV from pools of Culicoides caught at light [5][6][7][8][9]; (b) congruence of their distribution or seasonality with BTV outbreak sites [10][11][12]; or (c) the ability of populations in the UK to replicate BTV to high titres in the laboratory [13,14]. A key issue that arises in attempts to implicate Culicoides as biological vectors is the requirement to show an arbovirus is not only present and detectable in a putative vector, but also that it has replicated and disseminated within at least a proportion of the population. Infection of the salivary glands in vector Culicoides and subsequent presence of the arbovirus in saliva are required for transmission to occur [4].
Following the incursion of BTV into northern Europe, a series of studies were conducted which attempted to implicate Culicoides collected at outbreak sites in transmission of the virus [15][16][17]. These studies utilised real-time reverse transcription polymerase chain reaction assays (rtRT-PCR) to detect viral RNA within pools of Culicoides without subsequent virus isolation. This was largely because rtRT-PCR was readily available in national reference laboratories for BTV that were already processing large numbers of ruminant-derived samples. A virtual absence of data concerning BTV RNA quantity, however, meant that results were difficult to interpret. 'Positive' findings of detected viral RNA may merely have represented inactivated BTV that had persisted in individual Culicoides following an infected blood meal, or a sub-transmissible infection such as commonly occurs in this genus [4]. Subsequent to these early studies, the inclusion of cycle threshold (C q ) values as a semi-quantitative indication of RNA concentration has become more common [18,19]. Uncertainty remains, however, in interpretation of semi-quantitative or sqPCR data from pools of Culicoides and in the relationship between C q values representing quantity of viral RNA and the quantity of infectious virus as a means of defining transmissible infections.
In this study we compare C q values generated by sqPCR with detection of infectious virus in two colony populations of Culicoides, (C. nubeculosus and C. sonorensis) that were fed artificially through membranes on blood/virus suspensions. C. nubeculosus is distributed across the Palaearctic region and has already been found to be only poorly competent for BTV in a series of laboratory experiments conducted primarily using the single colony line also used in the present study [13]. In contrast, C. sonorensis is a major vector of BTV in the USA [20] and the colony line used has been shown to be competent for many BTV types and strains [21,22]. By comparing and contrasting the replication of BTV over time in these two colony lines of Culicoides species, as measured using the rtRT-PCR and traditional virus isolation techniques, we assess methods currently used to identify field-collected Culicoides as vectors of BTV and other arbovirus species such as the recently emerging Schmallenberg virus [23].

Materials and Methods
Batches of approximately three to four hundred 2-3 day old adult C. sonorensis and C. nubeculosus were allowed to feed on a defibrinated horse-blood (TCS Biosciences, UK)/virus suspension via the Hemotek system (Discovery Workshops, Accrington, UK) using a ParafilmH membrane (Cole-Parmer, Hanwell, UK). The C. sonorensis were from the PIRB-s-3 strain, originally derived from the USA SONORA line [24] and acquired by the laboratory in the 1970s, while the C. nubeculosus originated from the UK and have been maintained at The Pirbright Institute for a similar time period [25]. The virus used during the trial was derived from the 'western topotype' strain of BTV-1 that was originally isolated in KC cells (an embryonic cell line derived from C. sonorensis and originally created in the USA [26]) from an outbreak in Gibraltar (for further details see http://www.reoviridae.org/ dsRNA_virus_proteins/ReoID/btv-1.htm#GIB2007/01). The virus used had a C q of 16.74 prior to combining with blood and contained 6.5 Log 10 TCID 50 /ml infectious BTV prior to mixing 1:1 with horse blood.
Fully engorged, blood-fed individuals were selected under light CO 2 anaesthesia (defined as being sufficient to immobilise the Culicoides but without constant and prolonged exposure) and placed in clean waxed cardboard pill boxes (Watkins and Doncaster, Stainton, UK) with fine mesh tops. Boxes were then placed in incubators at a constant temperature of 25uC with a pad of cotton wool soaked in 5% sucrose provided on the mesh as an energy source; this was replaced daily. Immediately post-feeding and subsequently at 24 hour intervals for 11 days, 25 individuals of each species were removed from incubation, anaesthetised using CO 2 , and placed in racked 96 sample polypropylene tubes (Qiagen, Crawley, UK) containing 200 ml of Glasgow Minimum Essential Medium (GMEM: Invitrogen, Paisley, UK). These samples were immediately homogenised using 3 mm stainlesssteel ball-bearings (Dejay Distribution Ltd, UK) in a Tissuelyser TM (Qiagen, Crawley, UK) by shaking at 25 hz for one minute [27]. Tubes were centrifuged briefly at 1000 rpm and their sealing caps were removed to allow addition of a further 800 ml of GMEM with antibiotics (1000 IU/ml Penicillin/Streptomycin; 4 mg/ml Amphotericin B), the stainless steel ball-bearing was then removed, followed by an additional centrifugation for 3 mins at 3000 rpm. Processing of samples for BTV RNA and infectious virus occurred up to a maximum of three days following this treatment, during which time samples were stored at 4uC. Samples were titrated to a maximum $4.5 log 10 TCID 50 for C. sonorensis and $2.5 log 10 TCID 50 for C. nubeculosus. These titration limits allowed correlation between levels of infectious virus and BTV RNA to be investigated in the case of C. sonorensis while the maximum of 2.5 log 10 TCID 50 for C. nubeculosus represented a previously defined cut-off value for transmissible infections [28].

Dissemination of BTV in C. sonorensis
Intrathoracic Inoculation (IT). Approximately 100 C. sonorensis were inoculated with the BTV-1 strain parental to that described in the previous section (KC 2 ; C q = 14.88; 7 Log 10 T-CID 50 ) using pulled glass capillary needles (Narishige, Japan) and a microinjector with a manual syringe driver (Sutter Instruments, USA). Inoculation was carried out under light CO 2 anaesthesia and surviving midges were transferred to pill boxes and incubated for 11 days at 25uC. Culicoides sonorensis were then immobilized using CO 2 and fixed to a piece of masking tape with their ventral surface exposed. A drop of pillocarpine (parasympathomimetic alkaloid: Sigma Aldrich, UK) solution was then applied to the ventral surface of each C. sonorensis and saliva collected into a 1 ml microcapillary glass tube containing 10% foetal bovine serum (FBS) supplemented Glasgow's media (GMEM). The collected media was then expelled into individual Eppendorf tubes containing 0.5 ml of Schneider's Drosophila Media (Gibco TM ) containing 10% FBS. Individuals were then decapitated using a needle (Monoject TM hypodermic needle, 18 g 6 1.5: Covidien, USA) and the heads were ground, in 3-4 ml of GMEM supplemented with 10% foetal bovine serum, between washed glass cover-slips. The homogenate was collected into a 1.5 ml Eppendorf containing 1 ml of GMEM with antibiotics (1000 IU/ ml Penicillin/Streptomycin; 4 mg/ml Amphotericin B). Finally, the thorax and abdomen were homogenised together in a sterile Eppendorf tube and processed in the same manner as the whole insect samples described in the previous section. All homogenates were subsequently tested using both sqPCR (in duplicate) and by KC-cell titration followed by detection of BTV antigens by ELISA to a maximum detectable titre of $5.5 log 10 TCID 50 .
Membrane feeding. Culicoides sonorensis were fed as previously described, with BTV-1w GIB2007/1 (KC2 passage) and incubated at 25uC for seven days. Saliva was collected from sixty surviving C. sonorensis as for IT inoculation and then dissected under CO 2 anaesthesia using fine needles to divide bodies into head, thorax and abdominal sections. The heads were ground as for IT inoculation, while the thorax and abdomen sections were homogenised as for whole insects. All samples were subsequently tested using the sqPCR followed by KC-cell titration and antigen ELISA to a maximum detectable titre of $6 log 10 TCID 50 .

Effect of Pooling Upon Detection of BTV RNA in Culicoides
Culicoides sonorensis were infected using IT inoculation as described above, using the KC3 passage of BTV-1w GIB2007/ 1. The insects were then incubated for 7 days at 25uC before homogenization in pools, with a variable number of uninfected individuals, in 300 ml of GMEM for 1 minute at 25 Hz using a 3 mm stainless-steel ball bearing. The numbers of infected: uninfected C. sonorensis tested were: 1:2, 1:20, 1:50 and 1:100 with three replicates of each pool. The tubes were then each filled with a further 1.7 ml of GMEM with antibiotics and filtered (0.80 mm pore: Sartorius, Epsom, UK) using a 2 ml disposable syringe and the resulting supernatant stored as described above for up to three days at 4uC.

Detection of BTV
Real-time RT-PCR. Nucleic acid extraction was carried out using a Universal Biorobot (Qiagen, Crawley, UK) in a 96-well format using a QIAampH All Nucleic Acid MDx Kit (Qiagen, Crawley, UK). Forty microlitres of reconstituted protease were added to each well, followed by 50 ml of the sample, 190 ml of nuclease free water and 360 ml of lysis/binding buffer (Roche Diagnostics, Lewes, UK). SqPCR reactions were carried out according to a standardised assay [29]. Each 19 ml of reaction mastermix contained the following: 12.5 ml 26 reaction buffer mix, 1 ml of 20 pmol solution of each primer, 0.5 ml of 2.5 pmol each probe, 0.5 ml Mg 2 SO 4 , 0.5 ml 1:10 diluted ROX reference dye and 0.5 ml of the Superscript III/Platinum Taq enzyme mix (Invitrogen, Paisley, UK). Six microlitres of denatured RNA was added to the reaction mix and amplification was carried out in an Mx3005P PCR machine (Agilent Technologies, Stockport, UK). Fluorescence was measured at the end of the 60uC annealing/ extension step. Cycle threshold values for each sample were determined from the point at which threshold fluorescence was breached.
Indirect antigen sandwich ELISA. Quantification of infectious virus titre were carried out by application of serially diluted homogenised insect samples to KC monolayers in 96-well plates and then processed using a modified version of an antigen ELISA [30]. Plates were covered and incubated for seven days at 25uC, then 50 ml of supernatant from each well was transferred to an ELISA (Nunc) plate pre-coated (O/N at 4uC) with 50 ml/well of rabbit antibody raised against the 'western topotype' reference strain of BTV-1 (RSArrrr/01) (http://www.reoviridae.org/ dsRNA_virus_proteins/ReoID/btv-1.htm#RSArrrr/01) at a dilution of 1:2000 in coating buffer. Guinea pig anti BTV-1 antiserum was then diluted 1:2000 in blocking buffer (Tween-20 and 5% non-fat dried milk in PBST and 50 ml added to each well). Polyclonal rabbit anti-guinea pig immunoglobulins conjugated to HPR (DAKO Ltd, UK; 1:1000 dilution in 5% marvel blocking buffer) was then added and plates incubated for an additional 45 minutes at 37uC. Subsequently, each plate was washed three times with PBS and 50 ml/well of substrate added (0.4 mg/ml o-Phenylenediamine dihydrochloride (Sigma, UK) and 0.05% hydrogen peroxidise solution). Plates were then incubated at room temperature for 10 minutes without covering. Following this, 1 M sulphuric acid was used to halt the reaction and plates were read with a 490 nm filter using an arbitrary cut off of ,0.20 optical density above negative controls. Virus titres were calculated using the method of Spearman and Karber [31], with a range of detectable titre from 0.5 to 4.5 log 10 TCID 50 in 0.25 log 10 TCID 50 increments (C. sonorensis) or from 0.5 to 2.5 log 10 TCID 50 in 0.25 log 10 TCID 50 increments (C. nubeculosus).

Statistical Methods
For Culicoides processed as 'whole insects' change over time in the proportion of individuals with infectious virus was assessed using a generalised linear model (GLM) assuming binomial errors and a logit link function with days post infection as a factor. Wilcoxon rank-sum tests were used to compare C q values in Culicoides with infectious virus (.0.20 optical density on ELISA) and not detected on each day of sampling. For Culicoides which were membrane-fed and then dissected, C q values were analysed using linear mixed models with body part (abdomen, thorax, head or saliva) and infection status (BTV detected or not detected) as fixed effects and individual as a random effect. Observations with no C q value were right-censored arbitrarily at C q = 50 to allow them to be included in the analysis. Viral titres for these midges were analysed in the same way, except that observations with a titre #0.5 log 10 TCID50 were left-censored. For Culicoides which were intrathoracically inoculated and then dissected, titres and C q values were analysed using linear mixed models with body part (abdomen/thorax, head or saliva) as a fixed effect and individual as a random effect.

Infection of Culicoides by Artificial Feeding and Virus Replication Profile
From days 0 to 11, a total of 300 C. sonorensis were processed of which 162 individuals were positive for BTV RNA by sqPCR (mean C q : 31 The viral RNA load in the initial blood-meal recorded at day 0 differed significantly (W = 485; P = 0.003) between species with C q values for C. sonorensis (mean: 31.94; range 30.69 to 34.09) being lower than those for C. nubeculosus (mean: 32.72; range: 31.23 to 35.47) as a consequence of body size. In C. sonorensis, infectious BTV was found in all day 0 individuals (median log 10 TCID 50 : 3; range 2 to $4.5). The proportion of C. sonorensis in which infectious BTV was detected differed significantly (P,0.001) between samples on days 0 to 2 post infection (when blood containing virus was still present in the insects) and those sampled on days 3 to 11 post infection (following clearance of the blood meal). Significant differences in infection rate with BTV were not found, however, amongst samples within these time periods (Figures 1A and 2). The relationship between C q values and quantity of infectious BTV was initially poorly correlated (Spearman's r was not significantly different from zero (P.0.1)), but became significantly (P,0.001) negatively correlated from day 3 post infection following clearance of the original blood-meal ( Figure 2).
Considering only those C. sonorensis tested three or more days post-infection, C q values in which infectious virus was detected (mean C q : 25.28, range: 17.96 to 40.71) were significantly lower than those for individuals in which infectious virus was not detected (mean C q : 36.10, range: 24.96 to 44.59) (W = 106, P,0.001) (Figure 2). Furthermore, for C. sonorensis sampled between day 3 and day 11 post infection, 35 (out of 39) individuals for which infectious virus was detected had a C q value below the mean recorded on day 0 ( Figure 1A). By contrast, only 2 (out of 186) C. sonorensis in which infectious BTV was not detected had a C q value below the mean on day 0 ( Figure 1A). Vector competence (the proportion of individuals possessing fully disseminated infections) in C. sonorensis was estimated to be 16.4% (95% confidence interval (CI): 11.9-22.0%) based on the proportion of individuals with a C q value below the mean on day 0 (37 out of 225) compared with 17.3% (95% CI: 12.6-22.9%) based on the proportion of midges in which infectious virus was additionally detected (39 out of 225). This difference was not statistically significant (x 2 = 0.06, df = 1, P = 0.80). In C. nubeculosus only four insects (out of 225) sampled three or more days post infection had C q values below the mean on day 0 ( Figure 1B). This implies a vector competence of 1.8% (95% CI: 0.5-4.4%), which is significantly lower than that recorded for C. sonorensis (x 2 = 29.2, df = 1, P,0.001).

Dissemination of BTV in C. sonorensis
Survival rates of intrathoracically inoculated C. sonorensis were low, with approximately 5% of individuals surviving the 11 day incubation period (previously, survival rates have commonly exceeded 50% of individuals inoculated; Mellor pers. comm.). All five surviving individuals possessed fully disseminated infections that could be detected by sqPCR and by virus isolation. The largest quantity of viral RNA was found in the abdomen/thorax (mean C q : 18.17) followed by the head (mean C q : 21.99) and then the saliva (mean C q : 29.93). These differences were statistically significant (P,0.001). The quantity of infectious BTV was correlated with the C q values, with the greatest quantity in the abdomen (median log 10 TCID 50 : $5.5) followed by the head (median log 10 TCID 50 : 4.5) and the saliva (median log 10 TCID 50 : 3.13).
Eighteen (of 60) C. sonorensis that were membrane fed with BTV-1 generated duplicate samples containing BTV RNA in the separated abdomens at day seven post-infection. Eleven of these samples tested positive for infectious BTV (median log 10 TCID 50 : 3.38; range: 1.5 to $6). Six C. sonorensis contained viral RNA in the head, thorax and abdomen and tested positive for infectious BTV across all body parts. The greatest quantities of BTV RNA and infectious virus were found in the abdomen (mean C q : 24.9; range: 21.68 to 28.94; median log 10 TCID 50 : 4; range: 3 to $6) and the thorax (mean C q : 23.36; range: 20.57 to 25.47; median log 10 TCID 50 : 3.38; range: 2.75 to 3.75), while similar levels of RNA but less infectious virus was found in the head (mean C q : 25.03; range: 24.51 to 28.29; median log 10 TCID 50 : 1.5; range: 1.5 to 2.25). Viral titres for midges in which infectious BTV was detected differed significantly (P,0.006) between all body compartments, with the highest titres in the abdomen, followed by the thorax then the head, with the lowest titres in saliva ( Figure 3B). Viral titres and C q values were significantly (P,0.008) negatively correlated (Spearman's r,20.40) for all body compartments. Comparing the results for C. sonorensis processed as whole insects and those for the dissected individuals indicates that the proportion with fullydisseminated infections does not differ significantly from the proportion of insects with a C q value below the mean on day 0 (x 2 = 3.26, df = 1, P = 0.07). In addition, the whole-body C q values for C. sonorensis positive for BTV RNA sampled between days 3 and 11 post infection were comparable to those for the dissected abdomen (W = 374, P = 0.17) or thorax (W = 373, P = 0.18) of insects with a fully disseminated infection held for 7 days postinfection.

Effect of Pooling Upon Detection of BTV in Culicoides
All pools processed contained detectable BTV RNA and infectious virus ( Table 1). The C q values recorded for pools were similar irrespective of the number of uninfected C. sonorensis included, although more variation in infectious titre was present in pools containing 49 and 99 uninfected C. sonorensis.

Discussion
This study compared infection and dissemination of BTV-1w (GIB2007/1) within two colony-derived Culicoides species using two different means of virus quantification. Comparisons were drawn nubeculosus were fed upon a BTV-1 strain via a membrane based system (note the inverted scales for the y-axes). In each figure the dashed line indicates the mean C q value for Culicoides sampled on day 0. For C. sonorensis the symbols indicate whether (red down-triangles) or not (blue up-triangles) infectious BTV was isolated from the individual. For C. nubeculosus the symbols indicate whether infectious BTV was detected (red down-triangles) or the individual was not tested for infectious BTV (black circles). doi:10.1371/journal.pone.0070800.g001 between C q values generated from a front-line, diagnostic sqPCR used in reference laboratories across Europe, that measures the quantity of BTV RNA and an assay which was based on isolation and quantification of infectious virus. The results generated using the two assays were broadly similar and resembled those previously published that had examined BTV infection and dissemination in C. sonorensis and C. nubeculosus, but used alternative means of quantifying infectious virus to assess competence [21,22,32,33]. Despite these similarities, observations were recorded that have significant relevance to the use of diagnostic assays for implication of field collected Culicoides as vectors and in the use of colony lines as models for BTV infection.
While the median quantity of infectious BTV detected in the original blood-meal taken by C. sonorensis was similar to previous studies, the range in titre (exceeding 2.5 log 10 TCID 50 ) was far greater [22,34]. This variation was not reflected in the quantity of RNA directly extracted from homogenates and correlation between the two assays only improved once the original blood meal had been digested (by day 3 post-infection). A possible explanation for this discrepancy could lie in the fact that the homogenisation method used to disrupt samples prior to application to the KC-C. sonorensis cell line was not always sufficient to fully separate BTV bound to blood cells in the original blood meal. This would be likely to result in significant variation in the quantity of infectious BTV isolated and could in future be addressed by sonication of samples.
Following ingestion of a blood meal containing BTV, the titre of virus in Culicoides usually falls for a variable period of time, determined primarily by temperature [4,21,32]. During this 'eclipse phase', the number of C. sonorensis and C. nubeculosus containing infectious virus and BTV RNA fell, as virus imbibed with the blood meal was cleared by the majority of individuals. Evidence of replication of BTV was inferred where the quantity of BTV RNA in individuals exceeded that contained in the original blood meal. Previous studies had defined a threshold of 2.5-3.0 log 10 TCID 50 infectious BTV in C. sonorensis using detection systems based on isolation of virus from saliva followed by homogenisation and quantification of BTV from the whole insect [22,28]. This value was very similar to the quantity of virus originally imbibed by C. sonorensis, as demonstrated by the fact that inferring maximum and minimum quantities of BTV RNA in fully disseminated individuals using either intrathoracic inoculation or membrane feeding in the current study did not provide significantly different estimates of competence when compared to those samples exceeding quantities of virus immediately following injection.
Values indicating replication of BTV to potentially transmissible levels and exceeding quantities contained in the original bloodmeal were reached by 72 hours of incubation in C. sonorensis and within 120 hours of incubation in C. nubeculosus when measured either by sqPCR or isolation of infectious virus. This agreed closely with previous studies carried out using this C. sonorensis line, but different experimental procedures [22,32]. Peak quantities of BTV RNA were reached by 7 days post-feeding in both species and in C. sonorensis were correlated with large quantities of infectious virus ($4.5 log 10 TCID 50 ) comparable to those found in previous studies [22,28]. The range of competence inferred from the mean C q of BTV RNA in the original blood-meal for C. sonorensis (12-20% for days 7-11 post-infection) and C. nubeculosus (0-4%) again agreed closely with previous studies of these colony lines [21,22,35].
The findings of this study raise significant issues regarding the inference of competence in field collected Culicoides assessed purely by conventional PCR or rtRT-PCR where C q values are not reported. In the case of the cohort of C. sonorensis from days 7-11, some 70% of individuals falling below the quantity of virus RNA in the original blood-meal would have had the potential to be reported as positive by these assays, but were very unlikely to have transmissible infections. It remains unclear at present what proportion of these individuals possessed persistent sub-transmissible infections or retained inactivated BTV RNA. It is clear, however, that the findings of previous studies from the sole use of these methods in Culicoides species are unreliable [15,17,[36][37][38].
Comparison of the results from the current study with those where sqPCR C q values have previously been reported also requires care. It has been demonstrated in this study that the results obtained from testing homogenised pools of varying numbers of uninfected Culicoides, each containing a single fully disseminated C. sonorensis, does not appear to influence the RNA levels detected. This is important as the prevalence of BTVinfected individuals in field-collected populations is almost universally low, reducing the likelihood of several infected individuals occurring in single pools [39]. Nevertheless, where large numbers of pools are used the presence of several infected individuals in a single pool cannot be entirely precluded although this can be partially addressed in statistical analysis [40].
Two published studies have been conducted to date that have reported C q values from pools of field-collected Culicoides in the BTV-8 outbreak areas in Northern Europe. The first, carried out in Belgium and utilizing small pools of pigmented Culicoides (,10 Figure 3. Measurement of BTV RNA and infectious virus in different body compartments for C. sonorensis incubated for 7 days at 256C following feeding upon a BTV-1 strain via a membrane-based system. BTV RNA quantity is recorded by (A) C q values and (B) viral titres (log 10 TCID 50 ). Insects are divided into those for which infectious virus was detected and those for which it was not. Box and whisker plots show the median (line), interquartile range (box), 1.5 times the interquartile range (whiskers) and any outliers (crosses) for C q values in each body compartment. The relationship between viral titres and C q values in each body compartment is shown in (C). Colours indicate body compartment: abdomen (red); thorax (blue); head (cyan); and saliva (magenta). doi:10.1371/journal.pone.0070800.g003 Table 1. Detection of single fully infected C. sonorensis among pools of uninfected individuals processed using an optimised TissuelyserH assay (n = 3 in all cases). individuals/pool) recorded a C q range of 35.8-42.8 when utilising a cut-off value of 45 [19]. From the current study it appears likely that these 'positive' pools either contained no Culicoides with fully disseminated infections or that BTV RNA levels were reduced substantially during processing. In contrast, far higher RNA levels were reported from Germany, where seven pools of Culicoides recorded C q values ,25 when using a comparable assay to that used in the current study [18], despite using a sub-optimal extraction method [27]. The species of Culicoides present in the positive pools, however, remain uncertain as the relative brightness of bands from a conventional PCR assay was used for this purpose, a methodology that has not so far been successfully standardized for species identification. Due to this, the specific identity of Culicoides vector(s) involved in the single most costly incursion of BTV worldwide in recorded history remains unknown. More recent studies with SBV have utilised an alternative approach that involves the decapitation of pigmented Culicoides collected in the field [41]. Pools of heads are processed for SBV RNA using sqPCR in an initial screen and then the positive individuals present in each pool are identified to species level using the remainder of the body of each Culicoides. In addition, a DNA sequence barcode based on a partial sequence of the mitochondrial cytochrome oxidase I gene is generated from positive individuals which enables the each implicated specimen to be identified to species level with at least some degree of certainty. This system echoes earlier studies that also processed individuals and used a multiplex-based assay for identification [42], but has the advantage of greater phylogenetic resolution. One likely limitation in take-up of this technique is that, anecdotally, SBV appears to be transmitted with far higher efficiency than BTV in northern European Culicoides and it is therefore more straightforward to define vector species through processing fewer individuals. Given the high-throughput nature of both the homogenisation technique and sqPCR assay used to detect arboviruses in Culicoides, however, and the absence of a requirement for a cold-chain to preserve infectious virus, it is likely that this technique has great potential to improve the reliability of work involving Culicoidesarbovirus relationships worldwide.