Bacteriophage Receptor Binding Protein Based Assays for the Simultaneous Detection of Campylobacter jejuni and Campylobacter coli

Campylobacter jejuni and Campylobacter coli are the most common bacterial causes of foodborne gastroenteritis which is occasionally followed by a debilitating neuropathy known as Guillain-Barré syndrome. Rapid and specific detection of these pathogens is very important for effective control and quick treatment of infection. Most of the diagnostics available for these organisms are time consuming and require technical expertise with expensive instruments and reagents to perform. Bacteriophages bind to their host specifically through their receptor binding proteins (RBPs), which can be exploited for pathogen detection. We recently sequenced the genome of C. jejuni phage NCTC12673 and identified its putative host receptor binding protein, Gp047. In the current study, we localized the receptor binding domain to the C-terminal quarter of Gp047. CC-Gp047 could be produced recombinantly and was capable of agglutinating both C. jejuni and C. coli cells unlike the host range of the parent phage which is limited to a subset of C. jejuni isolates. The agglutination procedure could be performed within minutes on a glass slide at room temperature and was not hindered by the presence of buffers or nutrient media. This agglutination assay showed 100% specificity and the sensitivity was 95% for C. jejuni (n = 40) and 90% for C. coli (n = 19). CC-Gp047 was also expressed as a fusion with enhanced green fluorescent protein (EGFP). Chimeric EGFP_CC-Gp047 was able to specifically label C. jejuni and C. coli cells in mixed cultures allowing for the detection of these pathogens by fluorescent microscopy. This study describes a simple and rapid method for the detection of C. jejuni and C. coli using engineered phage RBPs and offers a promising new diagnostics platform for healthcare and surveillance laboratories.


Introduction
Campylobacter jejuni and Campylobacter coli are the major foodborne pathogens that cause enteritis and diarrhea [1]. Campylobacter infection is generally self-limiting, however, it can be followed by post-infectious sequelae including the autoimmune neurological disorder, Guillain-Barré syndrome [2].
Poultry and swine are the natural hosts for C. jejuni and C. coli and are thus the main sources of campylobacteriosis through the ingestion of contaminated food [1]. Rapid detection of these pathogens is needed to avoid the spread through the food-chain and for quick treatment and effective control. Generally, campylobacters are isolated from any sample using filtration, culture enrichment and growth on selective media followed by identification using microscopy and biochemical assays. Though traditional culture based identification of bacterial isolates remains a gold standard, these conventional methods are laborious and time consuming. Over the last decade, many efforts have been made to develop tools for the rapid detection of Campylobacter species, especially C. jejuni and C. coli. After the publication of the first C. jejuni genome sequence in 2000 [3], most of the reported rapid detection methods are based on the polymerase chain reaction (PCR) including multiplex and real-time PCR [4,5,6] and require DNA isolation, removal of PCR inhibitors from the samples, expensive instruments and reagents, as well as significant expertise to run these tests. Serological typing of campylobacters is also a widely used technique however, cost of antibody production and their shorter shelf life are limitations for this method. Thus, there is a need for rapid, specific, cost-effective and simple methods for the simultaneous detection of the two major foodborne pathogens, C. jejuni and C. coli. Several new techniques have recently been described for the detection of these bacteria [4,5,6,7,8,9,10,11], and any novel technique is expected to be superior in at least one major factor such as the specificity, rapidity, cost-effectiveness and/or ease of use.
Bacteriophages (or phages) have inherent host specificity and this specificity makes them excellent probes for identifying their target bacteria [12]. Phage typing schemes have been developed for many pathogens [13,14,15] including Campylobacter species [16,17,18]. Unfortunately, these schemes demand the laborious and time consuming preparation of bacterial cultures and may be limited by the problems associated with the production and storage of these phages. We have also shown that phages immobilized on solid surfaces can be utilized for the detection of bacterial pathogens without the necessity for traditional culturing [19,20,21]. However, like other detection methods, immobilized phage-based assays have their shortcomings. For example, desiccation of surface-immobilized phages severely impairs their binding efficiency, and over exposure of the bacterial cells to the phage particles results in the lysis and the eventual destruction of the captured bacteria being detected. These drawbacks of the immobilized phage based assays can be avoided by using phage receptor binding proteins (RBPs) instead of the whole phage particles [12,22].
We recently sequenced the genome of the lytic C. jejuni phage NCTC12673 and identified a putative RBP, Gp047; previously annotated as Gp48 [23]. Gp047 does not share sequence homology with any characterized phage RBPs, but homologues are found in all sequenced campylobacter phages [24,25,26,27,28]. We have also shown that antibodies against Gp047 cross-react with native Salmonella enterica serovar Typhimurium phage P22 tail spike protein (TSP), but not denatured TSP, suggesting that these proteins have structural similarity [23]. In addition, Gp047 forms sodium dodecyl sulfate resistant oligomers [23], similar to the TSPs of S. Typhimurium phage P22 and Shigella flexneri phage SF6 [29,30], and can specifically capture C. jejuni NCTC11168 cells when immobilized onto solid surfaces [11]. This ability of immobilized Gp047 to capture C. jejuni can also be exploited for the preconcentration of campylobacter cells before using more traditional methods for analyzing samples suspected to be contaminated with this organism.
Since Gp047 is an oligomer and is the largest protein encoded in the genome of NCTC12673 (152 kDa), its large size poses a challenge for expressing an active form of the protein in high yields. Here, we report the localization of the binding domain in Gp047 that allowed us to generate a shorter derivative that is onequarter the size of the original protein, yet is capable of detecting both C. jejuni and C. coli and can be used in various diagnostic platforms. We developed a simple glass slide agglutination assay for pure cultures which enabled us to rapidly screen the host range of Gp047. We also report a fluorescent microscopy based method for the detection of C. jejuni and C. coli in mixed cultures. To our knowledge, this is the first report of a phage RBP-based assay for the simultaneous detection of these Campylobacter species.

Confirmation of Host Binding Specificity
Host binding specificity was also tested through immunolabeling of the bacterial cells with CC-Gp047 followed by detection with anti-Gp047 antibodies and Alexa FluorH546 conjugated secondary antibodies. Fluorescent microscopy of the samples showed that CC-Gp047 binds specifically to C. jejuni NCTC11168, but not to S.
Typhimurium which was used as a negative control (Fig. 2). The DNA intercalating dye, DAPI, stained both C. jejuni as well as S. Typhimurium cells.

Agglutination Assay
An agglutination assay combining C. jejuni NCTC11168 cells with CC-Gp047 formed aggregates within one minute (Fig. 3). It has previously been demonstrated that C. jejuni is also capable of autoagglutination [31]. To rule out the possibility that bacteria were autoagglutinating, we always included a control suspension of the respective bacterial strain in PBS without CC-Gp047. The results showed that agglutination was caused by CC-Gp047 and was not due to autoagglutination since control suspensions lacking CC-Gp047 did not show agglutination. Other derivatives of Gp047 including N-Gp047, NC-Gp047, 3C-Gp047 and 4C-Gp047 did not cause agglutination of C. jejuni NCTC11168.
Next, the bacterial cells were suspended in different growth media (MH, BHI, LB, and NCZYM) as well as in different buffers (phosphate buffer pH 7.4, HEPES buffer pH 7.4, normal saline, Tris-HCl buffer pH 7.5 and 5% BSA in PBS) to determine if the agglutination assay can be performed in different salts and complex media. The assay showed the same results in all tests.
To test if bacterial cell growth phase or viability has an effect on the agglutination assay, we tested C. jejuni NCTC11168 cells collected after 18 and 62 hours growth containing cells in different growth states with the majority in the viable but non-culturable state in the 62 hour culture. Both preparations showed agglutination with CC-Gp047. In addition, formalin killed C. jejuni NCTC 11168 cells showed agglutination with CC-Gp047. These results suggest that the growth state has no influence on the recognition of the bacterial cells by this protein and the agglutination assay does not differentiate between live or dead cells.
We also tested the stability and shelf-life of the protein by testing its ability to agglutinate C. jejuni NCTC11168 at different time points after purification. CC-Gp047 was able to consistently agglutinate the bacterial cells up to the latest tested time point of 18 months after being stored at 4uC (data not shown).

Specificity and Sensitivity of the Assay
To check the host range of CC-Gp047, we tested several campylobacter strains isolated from a variety of sources including symptomatic and asymptomatic human patients, animal and animal products, environment and laboratory strains. In total, 40 strains of C. jejuni, 19 strains of C. coli, and representative strains of other Campylobacter species including C. fetus subsp. fetus, C. fetus subsp. venerealis, C. lari, C. upsaliensis and C. concisus were tested. In addition, we tested two strains of the related human pathogen Helicobacter pylori, two laboratory strains of E. coli, and S. Typhimurium. In total 38 out of 40 (95%) isolates of C. jejuni showed agglutination when mixed with CC-Gp047 and unexpectedly 17 out of 19 (90%) isolates of C. coli were also agglutinated in the presence of CC-Gp047 (Table 1). The assay showed 100% specificity for C. jejuni and C. coli as none of the other Campylobacter species, H. pylori, E. coli or S. Typhimurium showed agglutination with CC-Gp047 (Table 1). This confirmed that the assay can be used for the specific and simultaneous detection of C. jejuni and C. coli. Interestingly, CC-Gp047 showed a much broader host range in the agglutination assays compared to the lytic host range of phage NCTC 12673 from where Gp047 was derived from.
Direct Detection of C. jejuni and C. coli using EGFP-fused CC-Gp047 For the detection of C. jejuni and C. coli cells in mixed cultures, we generated CC-Gp047 fused with the fluorescent reporter protein, EGFP. Then C. jejuni NCTC11168, C. coli RM2228 and E. coli DH5a cell suspensions were individually incubated with chimeric EGFP_CC-Gp047, washed and observed under a fluorescent microscope. The C. jejuni and C. coli cells were detected as green fluorescing cells ( Fig. 4: A, C) indicating the binding of EGFP_CC-Gp047 while the E. coli DH5a cells ( Fig. 4: E) did not show fluorescence, as expected. This confirmed that CC-Gp047 maintains its binding activity and specificity when expressed as a chimeric EGFP_CC-Gp047 protein. We then prepared mixed cultures of C. jejuni NCTC11168 and E. coli DH5a by mixing the respective cell suspensions at a ratio of 1:25 (cell numbers) and tested if EGFP_CC-Gp047 can be used to specifically detect C. jejuni from a mixed culture. Only C. jejuni cells were specifically labelled ( Fig. 4: G) in the mixed culture. We also repeated the detection assay using whole cell lysates of IPTG induced E. coli C43 cells expressing EGFP_CC-Gp047. Fluorescent microscopy of the bacterial cells exposed to the EGFP_CC-Gp047 containing lysate still showed the effective labelling of C. jejuni NCTC11168 and C. coli RM2228, but not E. coli DH5a cells (not shown) suggesting that purification of the EGFP_CC-Gp047 is not necessary for the detection assay. This further increases the ease of EGFP_CC-Gp047 use for the detection of C. jejuni and C. coli.

Discussion
C. jejuni and C. coli are the major causative agents of campylobacteriosis and are responsible for more than 95% of human cases. We exploited the specificity of Gp047, the putative RBP of C. jejuni phage NCTC12673, to develop assays for the rapid detection of C. jejuni and C. coli. Gp047 does not exhibit any homology with other characterized phage RBPs using the basic alignment search tool (blast.ncbi.nlm.nih.gov/) or Pfam searches (http://pfam.sanger.ac.uk/). Thus, it was difficult to predict the location of the binding domains in this protein. Interestingly, the C-terminal part of the Gp047 is conserved in all the campylobacter phages where genome sequence data is available [28] and this is consistent with the results from this study which revealed that the host binding domain was also localized in the C-terminal part of this protein. The host binding domains of other phage RBPs have also been reported to be localized in the C-terminal [32,33,34] or the central portion of the protein [35] while the N-terminus is generally involved in the attachment of the tail receptor binding elements (either long fibers or short tail spikes) to the phage particle body [32,33,34]. The role of the N-terminus of Gp047 is yet not known, however, like most other tailed-phage RBPs, the C-terminus of this protein was found to be responsible for bacterial host recognition.
Receptor binding proteins of many phages including the TSPs of the well-characterized S. Typhimurium phage P22 and S. flexneri phage SF6 form trimers [29,30]. It was shown that Gp047 also forms oligomers [23]. Similar to the full-length Gp047, CC-Gp047 also formed trimers and higher order SDS-resistant oligomers (data not shown). This observation explains the ability of CC-Gp047 to agglutinate C. jejuni cells.
Interestingly, Gp047 was found to agglutinate a broader spectrum of bacterial strains compared to the lytic range of phage NCTC12673. A broader host spectrum was also observed for other phage-derived proteins compared to their host phage. For example, the recombinant cell binding domain (CBDP40) derived from listeria phage P40 showed broader binding activity than phage P40 [36]. Similarly, the recombinant phage lysin (LysK) derived from staphylococcus phage K had broader lytic activity compared to whole phage K [37].
Our RBP-based agglutination assay is very rapid and requires only a glass slide so the method can be used to complement any of the traditional methods. Indeed, this agglutination assay showed 100% specificity for C. jejuni and C. coli and 95% and 90% sensitivity for C. jejuni and C. coli, respectively which is better or comparable to other Campylobacter species detection methods. Besséde et al. compared conventional campylobacter culture   Phage Protein Based Pathogen Detection Systems PLOS ONE | www.plosone.org methods to two molecular biology methods: an in-house real-time PCR and a multiplex PCR named Seeplex Diarrhea ACE Detection, and three immunoenzymatic methods: Premier Campy, RidaScreen Campylobacter, and ImmunoCard Stat!-Campy. The authors found that the specificity of all these methods was in the range of 95 to 100% while sensitivity was 80% for the in-house PCR, 88% for the multiplex PCR, 95% for the Premier Campy and 91% for the immunoCard method [38]. Poppert et al. used a fluorescent in situ hybridization technique to detect Campylobacter species and observed a sensitivity of 90% and 97% for C. jejuni and C. coli, respectively [39]. One can conclude that the Gp047 RBP-based detection method offers comparable levels of sensitivity and specificity while lacking the drawbacks associated with the aforementioned diagnostic procedures (e.g. excessive labor and/or time consumption as well as the need for expensive equipment and/or reagents).
CC-Gp047 also retains its activity after storage at 4uC indicating that the protein remains stable during prolonged storage. And, bacteria can be resuspended in any of the most commonly used growth media and buffers for the agglutination assays providing greater flexibility for the users. The results demonstrated that different salts, salt concentrations as well as complex growth media do not influence the binding of Gp047 to bacterial cells. We have also developed an assay to separate and enrich C. jejuni cells from complex food matrices such as milk and chicken broth spiked with the bacteria using CC-Gp047 immobilized onto magnetic beads (S. Poshtiban et al., submitted). Furthermore, CC-Gp047 can be used in any platforms currently using antibodies and thus can potentially be used for bacterial detection from single isolated colonies in microbiological laboratories. For the direct detection of C. jejuni and C. coli from a sample containing a mixture of bacterial species, CC-Gp047 was expressed as a chimeric protein fused with a reporter fluorescent protein. The EGFP_CC-Gp047 chimera recognized both C. jejuni and C. coli cells and was able to specifically detect these cells even when they were in low numbers or in a mixed culture. Like other fluorescence based assays, the presence of fluorescence quenchers or autofluorophores in the sample may affect the efficiency of this assay. If required, these potential inhibitors can be removed by centrifugation or magnetic bead enrichment techniques.
Therefore we describe two rapid, simple and specific assays that provide proof-of-principle that a short derivative of the campylobacter phage receptor protein, CC-Gp047, can be used for the simultaneous detection of the major pathogenic Campylobacter species (C. jejuni and C. coli). These assays are not technically demanding and do not need special instrumentation, with the exception of a fluorescent microscope for the EGFP assays. Furthermore, since bacteriophage abundance is estimated at 10 31 particles worldwide, they represent a limitless resource for the

Bacterial Strains and Growth Conditions
C. jejuni and C. coli strains were routinely grown on Mueller Hinton (MH) agar (Difco) at 37uC under microaerobic conditions (85% N 2 , 10% CO 2 , and 5% O2). Other Campylobacter species and H. pylori strains were grown on MH agar supplemented with horse blood (5%, v/v). S. enterica serovar Typhimurium was grown on MH agar under aerobic conditions. Escherichia coli strains were grown on Luria Bertani (LB) agar supplemented with ampicillin, kanamycin or chloramphenicol at a final concentration of 100, 50 or 20 mg/ml, respectively, where needed. The list and sources of bacterial strains used in this study are given in Table 1.

Localization of Host Binding Domains in Gp047
To localize the host binding domains, truncated versions of Gp047 were expressed as GST-fusions using the pGEX 6P-2 vector (GE Healthcare) and E. coli BL21 cells (Invitrogen) unless otherwise mentioned. The lists of plasmids and primers used in this study are given in Table 2 and Table 3, respectively. Initially gp047 DNA fragments encoding for the N-(residues 1-684) and Cterminal (residues 681-1365) parts of Gp047 were amplified from pGEX_gp047 [23] using primer pairs CS710/CS711 and CS712/ CS713, respectively. Each amplicon was digested with EcoRI and XhoI and ligated with the EcoRI/XhoI double digested pGEX 6P-2 vector. The resulting vectors pGEX_ntgp047 and pGEX_ctgp047 were transformed into E. coli DH5a and then BL21; colonies were selected on LB agar supplemented with ampicillin. The in-frame cloning of the DNA fragments was confirmed by restriction analysis and nucleotide sequencing performed at the Molecular Biology Service Unit, Biological Sciences Department, University of Alberta.
The C-terminal half of Gp047 was further truncated into NC-Gp047 (residues 681-1041) and CC-Gp047 (residues 1040-1365); their encoding DNA fragments were amplified using primer pairs CS710/CS717 and CS716/CS713, respectively. The amplicons encoding for NC-Gp047 and CC-Gp047 were double digested with EcoRI and XhoI and cloned into pGEX 6P-2 as described above. The resulting vectors pGEX_ncgp047 and pGEX_ccgp047 were confirmed by restriction analysis and nucleotide sequencing.

Construction of EGFP-fused CC-Gp047
The EGFP-fused CC-Gp047 was expressed in the pET28a (Invitrogen) vector in which EGFP was fused at the N-terminal end of CC-Gp047 and has a His-tag at the N-terminal end. The ccgp047 was cut from pGEX_ccgp047 using BamHI and XhoI and cloned into pET28a pre-digested with BamHI and XhoI; the resulting vector pET28_ccgp047 was transformed into E. coli DH5a and then into E. coli C43 (derivative of E. coli BL21 [DE3]) cells.  The egfp was amplified from pBAD/HisB_egfp (a gift from Robert E. Campbell, Chemistry Department, University of Alberta) with primers CS1005 and CS1006. The PCR products were digested with NdeI and BamHI and cloned into NdeI and BamHI digested pET28_ccgp047. The resulting plasmid pET28_egfp-ccgp047 was transformed into E. coli C43 cells and colonies were selected on LB agar supplemented with kanamycin. The in-frame cloning was confirmed by nucleotide sequencing of the constructs.

Protein Expression and Purification
The full GST-Gp047 protein and GST-fused Gp047 derivatives were expressed in E. coli BL21 cells and the proteins were purified as described previously [23].
The EGFP-fused CC-Gp047 was expressed in E. coli C43 cells. The bacterial cells harbouring pET28_ccgp047 or pET28_egfp-ccgp047 were grown at 30uC in 2xYE broth while shaking at 200 rpm. When the culture reached an OD 600 of 0.3, the cells were induced with 0.5 mM isopropyl b-D-thiogalactopyranoside (IPTG) and shaken for 6 hours. The culture was then stored overnight at 4uC to allow complete maturation of the EGFP chromophore. The cells were harvested by centrifugation at 10,0006g for 15 minutes, resuspended in buffer A (20 mM sodium phosphate, 500 mM NaCl, 30 mM imidazole, pH 7.4) supplemented with the protease inhibitor cocktail (Roche) and were lysed by using a cell disrupter (Constant Systems, UK). The lysate was centrifuged at 174006g for 30 minutes followed by filtration through 0.2 mm syringe filters (Millipore). The protein was purified by immobilized metal ion affinity chromatography using a nickelnitrilotriacetic acid (Ni-NTA) agarose (Qiagen) column according to the manufacturer's protocol. The captured protein was eluted from the Ni-NTA column using buffer B (20 mM sodium phosphate, 500 mM NaCl, 500 mM imidazole, pH 7.4) and dialyzed against 4 L of phosphate buffered saline (pH 7.5), with two buffer changes. The protein concentration was determined by measuring sample absorbance at 280 and 260 nm. The protein purity was determined by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by Coomassie blue staining.

Bacterial Capture by Immobilized GST-Gp047 and Derivatives
The ability of Gp047 and its derivatives to capture C. jejuni was assayed as described previously [11]. Briefly, the gold substrates were washed sequentially in acetone, isopropyl alcohol, ethanol, and water for 5 min each to clean the surface prior to functionalization. The clean gold chips were incubated in a 2 mg/ml solution of glutathione in PBS for 1 h on an orbital shaker at 1000 rpm. The formation of a gluthathione selfassembled monolayer (GSH-SAM) ensures oriented attachment of proteins, resulting in a 3-fold improvement in bacteria capture density [11]. GST-Gp047 or its derivatives were immobilized onto the surfaces by incubating the GSH-SAM gold chips with a 5 mg/ ml solution of GST-Gp047 in PBS for 1 h at room temperature, followed by similar incubation with a 1 mg/ml solution of bovine serum albumin to block the free substrate surface. The gold substrates were exposed to C. jejuni NCTC11168 at 10 9 CFU/ml in PBS for 30 min at room temperature. The substrates were washed, fixed, dried, and imaged using a scanning electron microscope (LEO 1430). The bacterial binding density was estimated from the images by using the cell counter plugin of ImageJ software (National Institutes of Health).

Immunostaining of CC-Gp047 Bound to Bacterial Cells
Bacterial cells that were grown overnight were resuspended in 50 mM Tris-HCl buffer (pH 7.5) and added to a clean glass slide. After air drying, the bacteria were fixed with 5% glutaraldehyde for 5 minutes and then blocked with blocking buffer (5% BSA in 50 mM Tris-HCl buffer, pH 7.5). The slide was put into purified GST-fused CC-Gp047 (10 mg/ml final concentration) solution prepared in blocking buffer and incubated for one hour followed by washing 3x with Tris-HCl buffer. The slide was then put into rabbit anti-Gp047 antibody (1:1000 dilution) solution [23] and incubated for one hour and then washed 3x with Tris-HCl buffer. The slide was then exposed to 49,6-diamidino-2-phenylindole (DAPI) 1:1000 diluted from a 2 mg/ml stock solution and Alexa FluorH 546 conjugated goat anti-rabbit IgG antibodies (Invitrogen) 1:500 diluted in blocking buffer for one hour, followed by washing 3x with Tris-HCl buffer and air drying with minimal exposure to light. The slide was then observed under a Leica DMRXA fluorescent microscope.

Agglutination Assay
Bacterial overnight growth was harvested from agar plates and resuspended in PBS to an OD 600 ,1.5. A 50 ml aliquot of the cell suspension was mixed with 1 ml of CC-Gp047 (0.4 mg/ml) on a glass slide and swirled. Agglutination began to appear in the first minute, but the slide was swirled for up to 3 minutes in negative tests. The agglutination assay was also done using other derivatives of Gp047 including NC-Gp047, 3C-Gp047 and 4C-Gp047. Specificity or the true negative rate that measures the proportion of negatives which are correctly identified, and sensitivity or the true positive rate that measures the proportion of actual positive samples which are correctly identified were calculated using the formula, specificity = d/(b+d)6100, and sensitivity = a/(a+c)6100 where a: true positive; b: false positive; c: false negative and d: true negative.
The agglutination assay was performed with cells suspended in different growth media including MH, brain heart infusion, LB, and NZCYM broth as well as in phosphate buffer pH 7.4, HEPES buffer pH 7.4, saline (0.9% w/v sodium chloride in distilled water), Tris-HCl buffer pH 7.5, and 5% BSA in PBS.
The effect of bacterial cell viability on the agglutination assay was tested by using formalin killed cells. C. jejuni NCTC 11168 cells were suspended in PBS containing 2.5% formalin for 15 minutes, then cells were washed with PBS and finally resuspended in PBS.

Phage Lytic Assay
The phage lytic assay was performed as previously described [40] with minor modifications. Briefly, overnight bacterial growth was resuspended in brain heart infusion broth supplemented with 1 mM CaCl 2 and 10 mM MgSO 4 and incubated for 4 hours. Then the OD 600 of the culture was adjusted to 0.2 and 50 ml of the suspension was mixed with 5 ml NZCYM (0.6% w/v) overlay agar at 45uC. The mixture was then poured onto NZCYM agar plates. After solidification, the plates were spotted with 10 ml of phage suspensions. The spots were allowed to dry at room temperature before incubation for 24 h at 37uC under microaerobic conditions.

Detection of Bacteria using Chimeric EGFP_CC-Gp047
Bacterial growth was harvested from agar plates and the OD 600 was adjusted to 0.3 in 50 mM Tris-HCl buffer (pH 7.5); 5 ml purified EGFP-Gp047 (1.0 mg/ml) was mixed with 200 ml of the cell suspension and incubated for 20 minutes at room temperature on a shaker. The cells were washed three times with 50 mM Tris-HCl buffer by centrifugation at 50006g using a bench-top centrifuge for 2 minutes to remove unbound protein and finally resuspended in 100 ml buffer. The cells were then observed under a Leica DMRXA fluorescent microscope.
In addition to purified EGFP_CC-Gp047, the bacterial cells were also stained using whole cell lysates of IPTG induced E. coli C43 cells expressing EGFP_CC-Gp047. For the preparation of the cell lysate, E. coli C43 cells with pET28_egfp-ccgp047 were grown in 2xYT broth and were induced by IPTG as described above. The induced cells were resuspended in 50 mM Tris-HCl buffer containing a protease inhibitor cocktail (Roche) and were sonicated. After centrifugation, the lysate was filter sterilized through a 0.2 mm syringe-driven filter and stored at 4uC overnight to allow complete maturation of the EGFP chromophore. Then 7 ml of the lysate (protein concentration 1.6 mg/ml) was mixed with 200 ml bacterial cell suspension and incubated for 20 minutes at room temperature on a shaker, washed 3X and then resuspended in 100 ml Tris-HCl buffer.