Table 1.
Biological and plant growth promotional properties of PGPR isolates.
Table 2.
Genome assembly statistics.
Table 3.
Gene prediction and annotation summary.
Figure 1.
Stacked bar graph representing the percentage of predicted protein coding genes with significant matches (E-value< = 1e10−5) (A) in the NCBI nr-protein database identified using BLASTX and (B) the proportion of proteins binned by percent identity measured by BLASTX alignment.
Figure 2.
Using 31 conserved housekeeping protein-coding genes from (A) CPCRI-1 and CPCRI-3, (B) CPCRI-2, a phylogenetic tree was generated using AMPHORA2 [24], [94] and ClustalW [95]. The colored branch/node represents node where multiple strains of the same species are collapsed into a single species for representation.
Figure 3.
Pairwise alignment of CPCRI-1, CPCRI-2, CPCRI-3 genome with Enterobacter cloacae NCTC 9394, Pseudomonas putida S16 and Enterobacter cloacae ATCC 13047, respectively using the progressive Mauve aligner [34]. The colored blocks represent the homologous region between the genomes that are internally free from genomic rearrangement.
Table 4.
Pairwise comparison of CPCRI-1, CPCRI-2, and CPCRI-3 genomes against bacteria genomes using progressive Mauve aligner [34].
Figure 4.
The percentage of predicted coding genes of CPCRI PGPR genomes into (A) GO biological classes, (B) GO molecular classes, (C) SEED classification, (D) KEGG pathway classification.
Table 5.
List of genes attributable to plant growth promotion traits in the CPCRI PGPR genomes.