Figure 1.
Top level Class (bold) and example sub-class (regular face) SBOL semantic terminology with a simplified definition for clarity.
Figure 2.
Classes (black rectangles) describe types (open faced arrows, colored by type) of individual data elements (yellow rounded rectangles) and the composition relationships between them (closed faced arrows).
Figure 3.
Example of Registry Categories to SBOL class structure conversion.
These autogenerated classes are assigned to the partsregistry.org namespace to attribute them to the source and allow differentiation from SBOL-semantic classes, see the OWL implementation of SBOL-semantic File S1.
Table 1.
Example result of a DESCRIBE SPARQL query for a selected single promoter part.
Figure 4.
SPARQL query of SBPkb for dual-regulated promoter parts and their descriptions.
Table 2.
SBPkb promoter parts that can be both positively and negatively regulated with operator site sequence features.