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Full-length genome sequences of porcine epidemic diarrhoea virus strain CV777; Use of NGS to analyse genomic and sub-genomic RNAs

Fig 3

Short, internal, deletions within the ORF3 coding region.

A 2 nt deletion within the ORF3 coding region of the APHA strain produces a new termination codon (TAA, boxed) and hence the ORF3 protein is predicted to be severely truncated (see text). A 3 nt deletion in the FLI sequence should result in the loss of a single amino acid but since the initiation codon of ORF3 is lost in this virus (see Fig 2) then this change is unlikely to have any consequence.

Fig 3