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SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

Fig 1

Performance comparison for FASTA/Q file parsing.

Dataset A consists of 67,748 DNA sequences with average length of 41 Kb; dataset B is the human genome with 24 chromosomes, one mitochondrial sequence and 169 scaffolds and dataset C contains 9,186,045 Illumina SE reads. All tests were repeated five times, and the average time or memory usage was computed. See supplementary data for details of test data and commands.

Fig 1