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GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

Fig 3

Visualization of five near-native samples for the 7S RNA of human SRP (PDB ID 1MFQ).

The native structure graph is superimposed on the X-ray structure in the top panel. This superimposition indicates that the native structure graph (in blue and yellow) represents the native X-ray structure well. From top to bottom, the graphs most closely matching the native graphs are shown in gray (the darker the gray, the closer the match), superimposed on the native structure graph. These graphs show a good range of samples that could be used for reconstruction: the global shape of the molecule is recovered and the geometry of the junction is of interest.

Fig 3