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TCW: Transcriptome Computational Workbench

Figure 2

The runDE interface.

This shows the setup to compute the differential expression (DE) between tip and root using the edgeR method with default normalization. The results will be written into a database column called “TiRo”. Once all DE values are computed, the “All Pval Columns” can be selected followed by “Execute GOSeq” to compute the corresponding GO differential expression p-values.

Figure 2