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Conditional Random Fields for Fast, Large-Scale Genome-Wide Association Studies

Figure 6

Histograms and quantile-quantile (QQ) plots for the WTCCC data.

Negative p-value statistics obtained from our method (a,b), logistic regression that does not account for confounding factors (c,d) and from Eigenstrat [4] (e,f) for the WTCCC data. Dotted red lines in the QQ plots (right panel) indicate 95% confidence bounds.

Figure 6