Gene Network Landscape of the Ciliate Tetrahymena thermophila
Figure 1
The node and edge number against cutoff values for three methods.
For the CLR method, the cutoff value represents the Z-score with a minimal value of 3.34 corresponding to the 60% confidence level of the FDR test; for the PCC and SCC methods, the cutoff value represents the correlation coefficient. The minimal correlation coefficient is 0.6.