Microbial diversity and antimicrobial resistance in faecal samples from acute medical patients assessed through metagenomic sequencing

• Maho Yokoyama,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Department of Global Health and Infectious Diseases, Brighton and Sussex Medical School, Brighton, United Kingdom

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• Leon Peto,

  Roles Methodology, Writing – review & editing

  Affiliation Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Eric P. Budgell,

  Roles Data curation, Methodology, Writing – review & editing

  Affiliation Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0002-6148-9378

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• Nicola Jones,

  Roles Resources, Writing – review & editing

  Affiliation Department of Infection, Oxford University Hospitals NHS Foundation Trust, Oxford, United Kingdom

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• Elizabeth Sheridan,

  Roles Resources, Writing – review & editing

  Affiliation Department of Microbiology, University Hospitals Dorset, Bournemouth, United Kingdom

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• Jane Liu,

  Roles Conceptualization, Writing – review & editing

  Affiliation Department of Microbiology, Royal United Hospitals Bath, Bath, United Kingdom

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• A. Sarah Walker,

  Roles Funding acquisition, Methodology, Writing – review & editing

  Affiliation Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Nicole Stoesser,

  Roles Methodology, Writing – review & editing

  Affiliations Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom, Department of Infection, Oxford University Hospitals NHS Foundation Trust, Oxford, United Kingdom

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• Hyun S. Gweon,

  Roles Formal analysis, Methodology, Supervision, Writing – review & editing

  Affiliations School of Biological Sciences, University of Reading, Whiteknights, Reading, United Kingdom, UK Centre for Ecology & Hydrology, Wallingford, Oxfordshire, United Kingdom

  https://orcid.org/0000-0002-6218-6301

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• Martin J. Llewelyn

  Roles Conceptualization, Funding acquisition, Project administration, Writing – original draft

  * E-mail: M.J.Llewelyn@bsms.ac.uk

  Affiliation Department of Global Health and Infectious Diseases, Brighton and Sussex Medical School, Brighton, United Kingdom

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