Combining clinical and genomics queries using i2b2 – Three methods

Shawn N. Murphy; Paul Avillach; Riccardo Bellazzi; Lori Phillips; Matteo Gabetta; Alal Eran; Michael T. McDuffie; Isaac S. Kohane

doi:10.1371/journal.pone.0172187

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Open Access

Peer-reviewed

Research Article

Combining clinical and genomics queries using i2b2 – Three methods

Shawn N. Murphy ,

* E-mail: snmurphy@partners.org

Affiliations Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts, United States of America, Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Laboratory of Computer Science, Massachusetts General Hospital, Boston, Massachusetts, United States of America
⨯
Paul Avillach,

Affiliations Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, Massachusetts, United States of America
⨯
Riccardo Bellazzi,

Affiliations Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy, IRCCS Fondazione S. Maugeri, Pavia, Italy, Centre for Health Technologies, University of Pavia, Pavia, Italy
⨯
Lori Phillips,

Affiliation Research IS and Computing, Partners HealthCare, Charlestown, Massachusetts, United States of America
⨯
Matteo Gabetta,

Affiliations Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy, Biomeris s.r.l, Via Ferrata, Pavia, Italy
⨯
Alal Eran,

Affiliations Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, Massachusetts, United States of America
⨯
Michael T. McDuffie,

Affiliations Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, Massachusetts, United States of America
⨯
Isaac S. Kohane

Affiliations Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, Massachusetts, United States of America
⨯

Combining clinical and genomics queries using i2b2 – Three methods

Shawn N. Murphy,
Paul Avillach,
Riccardo Bellazzi,
Lori Phillips,
Matteo Gabetta,
Alal Eran,
Michael T. McDuffie,
Isaac S. Kohane

Published: April 7, 2017
https://doi.org/10.1371/journal.pone.0172187

Reader Comments (2)

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01 Mar 2018
01:46 GMT
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Just a type Posted by jearls on 01 Mar 2018 at 01:46 GMT
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10 May 2017
07:38 GMT
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source code for the data loading in the second approach Posted by mcaikovski on 10 May 2017 at 07:38 GMT

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