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Open Access
Peer-reviewed
Research Article
Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region
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Marie-Laure Endale Ahanda,
Affiliations INRA, UMR 1313 de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France, CEA, DSV, IRCM, SREIT, Laboratoire de Radiobiologie et Etude du Génome, Domaine de Vilvert, Jouy-en-Josas, France, AgroParisTech, Laboratoire de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France
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Eric R. Fritz,
Affiliation Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, United States of America
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Jordi Estellé,
Affiliations INRA, UMR 1313 de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France, CEA, DSV, IRCM, SREIT, Laboratoire de Radiobiologie et Etude du Génome, Domaine de Vilvert, Jouy-en-Josas, France, AgroParisTech, Laboratoire de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France
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Zhi-Liang Hu,
Affiliation Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, United States of America
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Ole Madsen,
Affiliation Animal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands
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Martien A. M. Groenen,
Affiliation Animal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands
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Dario Beraldi,
Current address: Cancer Research UK Cambridge Research Institute, Li Ka Shing Centre, Cambridge, United Kingdom
Affiliation The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, United Kingdom
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Ronan Kapetanovic,
Affiliation The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, United Kingdom
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David A. Hume,
Affiliation The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, United Kingdom
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Robert R. R. Rowland,
Affiliation Department of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, Kansas, United States of America
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Joan K. Lunney,
Affiliation Animal Parasitic Diseases Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, Maryland, United States of America
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Claire Rogel-Gaillard,
Affiliations INRA, UMR 1313 de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France, CEA, DSV, IRCM, SREIT, Laboratoire de Radiobiologie et Etude du Génome, Domaine de Vilvert, Jouy-en-Josas, France, AgroParisTech, Laboratoire de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France
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James M. Reecy,
Affiliation Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, Iowa, United States of America
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Elisabetta Giuffra
* E-mail: elisabetta.giuffra@jouy.inra.fr
Affiliations INRA, UMR 1313 de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France, CEA, DSV, IRCM, SREIT, Laboratoire de Radiobiologie et Etude du Génome, Domaine de Vilvert, Jouy-en-Josas, France, AgroParisTech, Laboratoire de Génétique Animale et Biologie Intégrative, Domaine de Vilvert, Jouy-en-Josas, France
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Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region
- Marie-Laure Endale Ahanda,
- Eric R. Fritz,
- Jordi Estellé,
- Zhi-Liang Hu,
- Ole Madsen,
- Martien A. M. Groenen,
- Dario Beraldi,
- Ronan Kapetanovic,
- David A. Hume,
- Robert R. R. Rowland
- Published: November 6, 2012
- https://doi.org/10.1371/journal.pone.0048607