Sequence Imputation of HPV16 Genomes for Genetic Association Studies

Benjamin Smith; Zigui Chen; Laura Reimers; Koenraad van Doorslaer; Mark Schiffman; Rob DeSalle; Rolando Herrero; Kai Yu; Sholom Wacholder; Tao Wang; Robert D. Burk

doi:10.1371/journal.pone.0021375

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Open Access

Peer-reviewed

Research Article

Sequence Imputation of HPV16 Genomes for Genetic Association Studies

Benjamin Smith,

Affiliation Department of Pediatrics, Albert Einstein College of Medicine, Bronx, New York, United States of America
⨯
Zigui Chen,

Affiliations Department of Pediatrics, Albert Einstein College of Medicine, Bronx, New York, United States of America, Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, United States of America
⨯
Laura Reimers,

Affiliation Department of Obstetrics, Gynecology and Women's Health, Albert Einstein College of Medicine, Bronx, New York, United States of America
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Koenraad van Doorslaer,

Affiliation Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, United States of America
⨯
Mark Schiffman,

Affiliation Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America
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Rob DeSalle,

Affiliation Sackler Institute of Comparative Genomics, American Museum of Natural History, New York, New York, United States of America
⨯
Rolando Herrero,

Affiliation Proyecto Epidemiológico Guanacaste, Fundación INCIENSA, San José, Costa Rica
⨯
Kai Yu,

Affiliation Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America
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Sholom Wacholder,

Affiliation Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, United States of America
⨯
Tao Wang,

Affiliation Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, New York, United States of America
⨯
Robert D. Burk

* E-mail: robert.burk@einstein.yu.edu

Affiliations Department of Pediatrics, Albert Einstein College of Medicine, Bronx, New York, United States of America, Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York, United States of America, Department of Obstetrics, Gynecology and Women's Health, Albert Einstein College of Medicine, Bronx, New York, United States of America, Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, New York, United States of America
⨯

Sequence Imputation of HPV16 Genomes for Genetic Association Studies

Benjamin Smith,
Zigui Chen,
Laura Reimers,
Koenraad van Doorslaer,
Mark Schiffman,
Rob DeSalle,
Rolando Herrero,
Kai Yu,
Sholom Wacholder,
Tao Wang

Published: June 23, 2011
https://doi.org/10.1371/journal.pone.0021375

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01 May 2012
20:22 GMT
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Clarification on positions of lineage-specific mutations. Posted by bcsmith83 on 01 May 2012 at 20:18 GMT

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Single nucleotide polymorphisms
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HPV-16
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Genomics
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Cancer genomics
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Cervical cancer
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BLAST algorithm
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Nucleotide sequencing
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Human papillomavirus
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