Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru; Osamu Nishimura; Shigehiro Kuraku

doi:10.1371/journal.pone.0235748

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Open Access

Peer-reviewed

Research Article

Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru ,

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: koh.onimaru@riken.jp

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan

http://orcid.org/0000-0002-2428-9510

⨯
Osamu Nishimura,

Roles Methodology, Writing – review & editing

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan

http://orcid.org/0000-0003-1969-2580

⨯
Shigehiro Kuraku

Roles Funding acquisition, Supervision, Writing – review & editing

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan
⨯

Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru,
Osamu Nishimura,
Shigehiro Kuraku

Published: July 23, 2020
https://doi.org/10.1371/journal.pone.0235748

About the Authors

Koh Onimaru

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: koh.onimaru@riken.jp

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan

http://orcid.org/0000-0002-2428-9510

Osamu Nishimura

Roles Methodology, Writing – review & editing

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan

http://orcid.org/0000-0003-1969-2580

Shigehiro Kuraku

Roles Funding acquisition, Supervision, Writing – review & editing

Affiliation Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research (BDR), Chuo-ku, Kobe, Hyogo, Japan

Competing Interests

The authors have declared that no competing interests exist.

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Mammalian genomics
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Sequence motif analysis
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Convolution
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Human genomics
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DNase Seq
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Epigenomics
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Genomics
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Genomic signal processing
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