About the Authors

Elisabeth M. Bik

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

‡ These authors are co-first authors on this work.

Affiliation uBiome, San Francisco, CA, United States of America

Sara W. Bird

Roles Conceptualization, Data curation, Formal analysis, Supervision, Validation, Writing – original draft, Writing – review & editing

‡ These authors are co-first authors on this work.

Affiliation uBiome, San Francisco, CA, United States of America

Juan P. Bustamante

Roles Data curation, Formal analysis, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Luis E. Leon

Roles Data curation, Formal analysis, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Pamela A. Nieto

Roles Data curation, Formal analysis, Methodology, Validation, Visualization, Writing – original draft

Affiliation uBiome, San Francisco, CA, United States of America

Kwasi Addae

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Víctor Alegría-Mera

Roles Data curation, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Cristian Bravo

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Denisse Bravo

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Juan P. Cardenas

Roles Data curation, Methodology, Writing – original draft

Affiliation uBiome, San Francisco, CA, United States of America

Glenn A. Carson

Roles Formal analysis, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Adam Caughey

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Paulo C. Covarrubias

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

José Pérez-Donoso

Roles Methodology, Supervision

Affiliation uBiome, San Francisco, CA, United States of America

Graham Gass

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Sarah L. Gupta

Roles Investigation, Validation, Writing – original draft

Affiliation uBiome, San Francisco, CA, United States of America

Kira Harman

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Donna Marie B. Hongo

Roles Data curation, Formal analysis, Supervision, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Juan C. Jiménez

Roles Methodology, Supervision, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Laurens Kraal

Roles Conceptualization, Data curation, Project administration

Affiliation uBiome, San Francisco, CA, United States of America

Felipe Melis-Arcos

Roles Conceptualization, Data curation, Software

Affiliation uBiome, San Francisco, CA, United States of America

Eduardo H. Morales

Roles Methodology, Supervision, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Amanda Morton

Roles Methodology, Supervision, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Camila F. Navas

Roles Data curation, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Harold Nuñez

Roles Data curation, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Eduardo Olivares

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Nicolás Órdenes-Aenishanslins

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Francisco J. Ossandon

Roles Data curation, Formal analysis, Methodology, Software, Visualization

Affiliation uBiome, San Francisco, CA, United States of America

Richard Phan

Roles Methodology, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Raul Pino

Roles Data curation, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Katia Soto-Liebe

Roles Project administration, Supervision

Affiliation uBiome, San Francisco, CA, United States of America

Ignacio Varas

Roles Data curation, Methodology, Software

Affiliation uBiome, San Francisco, CA, United States of America

Patricia Vera-Wolf

Roles Data curation, Software, Visualization

Affiliation uBiome, San Francisco, CA, United States of America

Nathaniel A. Walton

Roles Conceptualization, Funding acquisition, Supervision

Affiliation uBiome, San Francisco, CA, United States of America

Daniel E. Almonacid

Roles Conceptualization, Data curation, Supervision, Writing – original draft, Writing – review & editing

Affiliation uBiome, San Francisco, CA, United States of America

Audrey D. Goddard

Roles Conceptualization, Data curation, Formal analysis, Supervision, Validation, Writing – review & editing

Affiliation uBiome, San Francisco, CA, United States of America

Juan A. Ugalde

Roles Conceptualization, Data curation, Formal analysis, Methodology, Validation, Visualization, Writing – review & editing

Affiliation uBiome, San Francisco, CA, United States of America

Susan Zneimer

Roles Data curation, Formal analysis, Methodology, Supervision, Validation

Affiliation uBiome, San Francisco, CA, United States of America

Jessica Richman

Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

Affiliation uBiome, San Francisco, CA, United States of America

Zachary S. Apte

Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

zac@ubiome.com

Affiliations uBiome, San Francisco, CA, United States of America, Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, United States of America

Competing Interests

All of the authors of the paper are current or past employees of uBiome, Inc. and have received stock options as well as other compensation. Some authors have patents pending in relation to this work: US Application No 15/198,818, Method and system for diagnostic testing, Application No 16/084,945, Method and system for microbiome-derived diagnostics and therapeutics for bacterial vaginosis, and Application No 16/115,542, Method and system for characterization for female reproductive system-related conditions associated with microorganisms. The data in this article were used in the development of a commercially available test product developed and marketed by uBiome. This does not alter our adherence to PLOS ONE policies on sharing data and materials.