RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari; Ian Wark; Carlo Montemagno

doi:10.1371/journal.pone.0194583

Loading metrics

Open Access

Peer-reviewed

Research Article

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: jabbari@ualberta.ca

Affiliation Department of Computer Science, University of Vermont, Burlington, Vermont, United States of America

http://orcid.org/0000-0002-7155-2297

⨯
Ian Wark,

Roles Software, Validation, Visualization

Affiliation Ingenuity Lab, Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, Canada
⨯
Carlo Montemagno

Roles Funding acquisition, Supervision

Affiliation Southern Illinois University Carbondale, Carbondale, Illinois, United States of America
⨯

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari,
Ian Wark,
Carlo Montemagno

Published: April 5, 2018
https://doi.org/10.1371/journal.pone.0194583

About the Authors

Hosna Jabbari

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: jabbari@ualberta.ca

Affiliation Department of Computer Science, University of Vermont, Burlington, Vermont, United States of America

http://orcid.org/0000-0002-7155-2297

Ian Wark

Roles Software, Validation, Visualization

Affiliation Ingenuity Lab, Department of Chemical and Materials Engineering, University of Alberta, Edmonton, Alberta, Canada

Carlo Montemagno

Roles Funding acquisition, Supervision

Affiliation Southern Illinois University Carbondale, Carbondale, Illinois, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Subject Areas
?

For more information about PLOS Subject Areas, click here.
We want your feedback. Do these Subject Areas make sense for this article? Click the target next to the incorrect Subject Area and let us know. Thanks for your help!

RNA structure
Is the Subject Area "RNA structure" applicable to this article?

Thanks for your feedback.
RNA folding
Is the Subject Area "RNA folding" applicable to this article?

Thanks for your feedback.
Free energy
Is the Subject Area "Free energy" applicable to this article?

Thanks for your feedback.
RNA structure prediction
Is the Subject Area "RNA structure prediction" applicable to this article?

Thanks for your feedback.
Algorithms
Is the Subject Area "Algorithms" applicable to this article?

Thanks for your feedback.
Molecular structure
Is the Subject Area "Molecular structure" applicable to this article?

Thanks for your feedback.
Pseudoknots
Is the Subject Area "Pseudoknots" applicable to this article?

Thanks for your feedback.
RNA stem-loop structure
Is the Subject Area "RNA stem-loop structure" applicable to this article?

Thanks for your feedback.