Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

Katherine C. H. Amrine; Barbara Blanco-Ulate; Dario Cantu

doi:10.1371/journal.pone.0118731

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Open Access

Peer-reviewed

Research Article

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

Katherine C. H. Amrine,

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America
⨯
Barbara Blanco-Ulate,

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America
⨯
Dario Cantu

* E-mail: dacantu@ucdavis.edu

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America
⨯

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

Katherine C. H. Amrine,
Barbara Blanco-Ulate,
Dario Cantu

Published: March 2, 2015
https://doi.org/10.1371/journal.pone.0118731

About the Authors

Katherine C. H. Amrine

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America

Barbara Blanco-Ulate

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America

Dario Cantu

* E-mail: dacantu@ucdavis.edu

Affiliation Department of Viticulture and Enology, University of California Davis, Davis, California, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: KCHA DC. Performed the experiments: KCHA. Analyzed the data: KCHA BBU. Contributed reagents/materials/analysis tools: KCHA. Wrote the paper: KCHA BBU DC.

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Genetic networks
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Arabidopsis thaliana
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Gene ontologies
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Pathogens
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Microarrays
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Transcription factors
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Gene expression
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Network analysis
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