Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

Joakim Ågren; Anders Sundström; Therese Håfström; Bo Segerman

doi:10.1371/journal.pone.0039107

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Peer-reviewed

Research Article

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

Joakim Ågren ,

Contributed equally to this work with: Joakim Ågren, Anders Sundström

Affiliations Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
⨯
Anders Sundström ,

Contributed equally to this work with: Joakim Ågren, Anders Sundström

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden
⨯
Therese Håfström,

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden
⨯
Bo Segerman

* E-mail: bo.segerman@sva.se

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden
⨯

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

Joakim Ågren,
Anders Sundström,
Therese Håfström,
Bo Segerman

Published: June 18, 2012
https://doi.org/10.1371/journal.pone.0039107

About the Authors

Joakim Ågren

Contributed equally to this work with: Joakim Ågren, Anders Sundström

Affiliations Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden

Anders Sundström

Contributed equally to this work with: Joakim Ågren, Anders Sundström

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden

Therese Håfström

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden

Bo Segerman

* E-mail: bo.segerman@sva.se

Affiliation Department of Bacteriology, National Veterinary Institute (SVA), Uppsala, Sweden

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: BS JÅ. Performed the experiments: JÅ AS TH. Analyzed the data: JÅ AS TH BS. Wrote the paper: JÅ BS. Designed and implemented the software used in analysis: AS BS.

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Genomics
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Sequence alignment
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Phylogenetics
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Genome analysis
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Biomarkers
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Bacterial genomics
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Bacillus
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Multiple alignment calculation
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