Systematic Clustering of Transcription Start Site Landscapes

Xiaobei Zhao; Eivind Valen; Brian J. Parker; Albin Sandelin

doi:10.1371/journal.pone.0023409

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Open Access

Peer-reviewed

Research Article

Systematic Clustering of Transcription Start Site Landscapes

Xiaobei Zhao,

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark
⨯
Eivind Valen,

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark
⨯
Brian J. Parker,

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark
⨯
Albin Sandelin

* E-mail: albin@binf.ku.dk

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark
⨯

Systematic Clustering of Transcription Start Site Landscapes

Xiaobei Zhao,
Eivind Valen,
Brian J. Parker,
Albin Sandelin

Published: August 24, 2011
https://doi.org/10.1371/journal.pone.0023409

About the Authors

Xiaobei Zhao

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark

Eivind Valen

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark

Brian J. Parker

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark

Albin Sandelin

* E-mail: albin@binf.ku.dk

Affiliation Department of Biology and Biotech Research and Innovation Centre, The Bioinformatics Centre, Copenhagen University, Copenhagen, Denmark

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: XZ EV AS. Performed the experiments: XZ. Analyzed the data: XZ. Contributed reagents/materials/analysis tools: XZ EV BP AS. Wrote the paper: XZ AS.

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Pseudogenes
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Mammalian genomics
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DNA methylation
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Epigenetics
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Nucleosomes
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Sequence alignment
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Hierarchical clustering
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Human genomics
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