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Open Access
Peer-reviewed
Research Article
Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci
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Christopher L. Schardl ,
* E-mail: Schardl@uky.edu
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Carolyn A. Young,
Affiliation Forage Improvement Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, United States of America
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Uljana Hesse,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Stefan G. Amyotte,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Kalina Andreeva,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Patrick J. Calie,
Affiliation Eastern Kentucky University, Richmond, Kentucky, United States of America
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Damien J. Fleetwood,
Affiliation AgResearch Laboratory, School of Biological Sciences, University of Auckland, Auckland, New Zealand
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David C. Haws,
Affiliation Statistics Department, University of Kentucky, Lexington, Kentucky, United States of America
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Neil Moore,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Birgitt Oeser,
Affiliation Institute of Plant Biology and Biotechnology, University of Muenster, Muenster, Germany
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Daniel G. Panaccione,
Affiliation Division of Plant and Soil Sciences, West Virginia University, Morgantown, West Virginia, United States of America
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Kathryn K. Schweri,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Christine R. Voisey,
Affiliation Grasslands Research Centre, AgResearch, Palmerston North, New Zealand
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Mark L. Farman,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Jerzy W. Jaromczyk,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Bruce A. Roe,
Affiliation Department of Chemistry and Biochemistry, Stephenson Research and Technology Center, University of Oklahoma, Norman, Oklahoma, United States of America
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Donal M. O'Sullivan,
Affiliation The John Bingham Laboratory, National Institute of Agricultural Botany, Cambridge, United Kingdom
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Barry Scott,
Affiliation Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand
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Paul Tudzynski,
Affiliation Institute of Plant Biology and Biotechnology, University of Muenster, Muenster, Germany
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Zhiqiang An,
Affiliation Texas Therapeutics Institute, University of Texas Health Science Center, Houston, Texas, United States of America
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Elissaveta G. Arnaoudova,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Charles T. Bullock,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Nikki D. Charlton,
Affiliation Forage Improvement Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, United States of America
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Li Chen,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Murray Cox,
Affiliation Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand
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Randy D. Dinkins,
Affiliation Forage-Animal Production Research Unit, United States Department of Agriculture Agricultural Research Service, Lexington, Kentucky, United States of America
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Simona Florea,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Anthony E. Glenn,
Affiliation Toxicology and Mycotoxin Research Unit, Richard B. Russell Research Center, United States Department of Agriculture Agricultural Research Service, Athens, Georgia, United States of America
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Anna Gordon,
Affiliation The John Bingham Laboratory, National Institute of Agricultural Botany, Cambridge, United Kingdom
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Ulrich Güldener,
Affiliation Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München (GmbH), Neuherberg, Germany
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Daniel R. Harris,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Walter Hollin,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Jolanta Jaromczyk,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Richard D. Johnson,
Affiliation Grasslands Research Centre, AgResearch, Palmerston North, New Zealand
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Anar K. Khan,
Affiliation Invermay Agricultural Centre, Mosgiel, New Zealand
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Eckhard Leistner,
Affiliation Institut fuer Pharmazeutische Biologie, Universitaet Bonn, Bonn, Germany
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Adrian Leuchtmann,
Affiliation Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
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Chunjie Li,
Affiliation College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
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JinGe Liu,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Jinze Liu,
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Miao Liu,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Wade Mace,
Affiliation Grasslands Research Centre, AgResearch, Palmerston North, New Zealand
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Caroline Machado,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Padmaja Nagabhyru,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Juan Pan,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Jan Schmid,
Affiliation Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand
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Koya Sugawara,
Affiliation Institute of Livestock and Grassland Science, National Agriculture and Food Research Organization (NARO), Nasushiobara, Tochigi, Japan
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Ulrike Steiner,
Affiliation Institut fuer Pharmazeutische Biologie, Universitaet Bonn, Bonn, Germany
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Johanna E. Takach,
Affiliation Forage Improvement Division, The Samuel Roberts Noble Foundation, Ardmore, Oklahoma, United States of America
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Eiji Tanaka,
Affiliation Ishikawa Prefectural University, Suematsu, Nonoichi, Ishikawa, Japan
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Jennifer S. Webb,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Ella V. Wilson,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Jennifer L. Wiseman,
Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America
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Ruriko Yoshida,
Affiliation Statistics Department, University of Kentucky, Lexington, Kentucky, United States of America
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Zheng Zeng
Affiliation Computer Science Department, University of Kentucky, Lexington, Kentucky, United States of America
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Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci
- Christopher L. Schardl,
- Carolyn A. Young,
- Uljana Hesse,
- Stefan G. Amyotte,
- Kalina Andreeva,
- Patrick J. Calie,
- Damien J. Fleetwood,
- David C. Haws,
- Neil Moore,
- Birgitt Oeser
- Published: February 28, 2013
- https://doi.org/10.1371/journal.pgen.1003323