DMRT1 Is Required for Mouse Spermatogonial Stem Cell Maintenance and Replenishment

Male mammals produce sperm for most of postnatal life and therefore require a robust germ line stem cell system, with precise balance between self-renewal and differentiation. Prior work established doublesex- and mab-3-related transcription factor 1 (Dmrt1) as a conserved transcriptional regulator of male sexual differentiation. Here we investigate the role of Dmrt1 in mouse spermatogonial stem cell (SSC) homeostasis. We find that Dmrt1 maintains SSCs during steady state spermatogenesis, where it regulates expression of Plzf, another transcription factor required for SSC maintenance. We also find that Dmrt1 is required for recovery of spermatogenesis after germ cell depletion. Committed progenitor cells expressing Ngn3 normally do not contribute to SSCs marked by the Id4-Gfp transgene, but do so when spermatogonia are chemically depleted using busulfan. Removal of Dmrt1 from Ngn3-positive germ cells blocks the replenishment of Id4-GFP-positive SSCs and recovery of spermatogenesis after busulfan treatment. Our data therefore reveal that Dmrt1 supports SSC maintenance in two ways: allowing SSCs to remain in the stem cell pool under normal conditions; and enabling progenitor cells to help restore the stem cell pool after germ cell depletion.


Author Summary
The Dmrt1 gene is a deeply conserved gonadal regulator that is expressed in all mitotic germ cells of the mouse, including spermatogonial stem cells (SSCs). We previously showed that Dmrt1 controls the mitosis/meiosis switch in differentiating mouse spermatogonia. Here we have examined the role of Dmrt1 in undifferentiated spermatogonia and found that Dmrt1 plays two crucial roles in sustaining the population of SSCs. First, Dmrt1 is required to maintain the SSC pool during normal conditions: loss of Dmrt1 in SSCs causes loss of the SSC maintenance factor PLZF and differentiation of SSCs. This result suggests that Dmrt1 is necessary for SSC self-renewal. Second, Dmrt1 is required to

Introduction
Mammalian spermatogenesis begins at puberty and most mammals make sperm throughout much of adult life, relying on a pool of spermatogonial stem cells (SSCs) (reviewed in [1]). In the mouse, individual SSCs are found among the cohort of GFRα1-positive undifferentiated type A spermatogonia (A undiff ). A undiff occur as single cells (A single , or A s ), connected pairs (A paired , or A pr ) or chains of 4 to 16 cells (A aligned , or A al ) formed by incomplete cytokinesis [1,2]. Differentiation begins when A al cells transition to c-KIT-positive A 1 spermatogonia [3]. A 1 spermatogonia subsequently undergo five additional rounds of amplifying mitotic divisions accompanied by further differentiation, producing A 2 , A 3 , A 4 , Intermediate (In), and type B spermatogonia. The type B spermatogonia divide and differentiate into preleptotene spermatocytes that undergo meiosis [1].
SSC maintenance requires somatic niche factors including GDNF, which is produced by Sertoli cells and signals through the SSC cell surface receptors RET and GFRα1 [4]. Loss of Gdnf or either of its coreceptors Ret and Gfra1 causes SSC depletion, while overexpression of GDNF causes accumulation of undifferentiated A s cells [4][5][6]. SSC maintenance also is controlled by intrinsic factors including the transcriptional regulator PLZF, whose loss causes a progressive failure of spermatogenesis [7,8].
The precise identity of the SSC pool is still being established. The original SSC model, known as the A s model, proposed that A s cells are definitive stem cells and that formation of chains reflects commitment to differentiation [1,9]. However, in recent years, the A s model has been challenged and refined by approaches including detailed expression analysis and live imaging. It is now clear that the A s population is heterogeneous, with only a subset of A s cells normally functioning as SSCs [2,[10][11][12][13][14]. In addition, two major pools of A undiff cells can be distinguished by the expression GFRα1 and NGN3. The GFRα1-positive population contains the great majority of SSC activity [11,12], while the NGN3-positive population normally functions as a pool of transit-amplifying cells that will eventually undergo differentiation and meiosis [15].
Recently, the transcriptional regulator ID4 was shown to be expressed in a small subset of undifferentiated spermatogonia that closely correlate with SSC activity in functional assays, such as transplantation [12,16,17]. However, the pool of GFRα1-positive cells that includes the SSCs is dynamic. Lineage tracing and live imaging experiments showed that A pr and A al chains can fragment to generate A s cells and shorter chains that are proposed to function as SSCs [2]. Moreover, even NGN3-positive spermatogonia, which normally will proceed to differentiation and meiosis, can form SSCs when the germ line is challenged by stresses such as cytotoxic busulfan treatment or transplantation [2,10]. Thus while much SSC activity resides in ID4-positive cells, cell fate commitment in the early spermatogonial lineage is surprisingly fluid. How the interconversion of undifferentiated spermatogonial cell types is regulated to achieve homeostasis and steady state spermatogenesis is yet to be established. DMRT1 is a gonad-specific transcription factor related to the invertebrate sexual regulators Doublesex and MAB-3 and plays a key role in both germline and somatic development in the testis [18]. DMRT1 is expressed in spermatogonia but not in meiotic or postmeiotic germ cells [19]. DMRT1 has at least three distinct functions in male germ cell development in mice. First, during late fetal development on sensitive strain backgrounds DMRT1 acts as a tumor suppressor that promotes mitotic arrest and silences pluripotency genes including Sox2. Dmrt1 mutant germ cells form testicular teratomas with high incidence in mice of a susceptible strain background [20] and GWAS studies linking DMRT1 to human germ cell cancer suggest that DMRT1 may act analogously in human germ cells [21]. Second, DMRT1 is required perinatally for reactivation of mitosis and migration of prospermatogonia to the stem cell niche and for their subsequent survival [22,23]. Third, DMRT1 regulates the mitosis/meiosis decision during adult steady state spermatogenesis: DMRT1 in NGN3-positive progenitor cells promotes spermatogonial proliferation and differentiation and inhibits premature meiotic initiation [24]. In addition to these germ line functions, DMRT1 is required to prevent testicular Sertoli cells from transdifferentiating into their ovarian equivalents, granulosa cells [25,26].
In this study we used conditional gene targeting to investigate whether Dmrt1 plays a role in maintaining a functional SSC population. We found that loss of Dmrt1 in putative SSCs caused progressive loss of spermatogenesis that was associated with reduced PLZF expression and loss of ID4-and GFRα1-positive spermatogonia. We also investigated the role of DMRT1 in recovery from spermatogonial depletion and found that DMRT1 is required in Ngn3-Cre expressing spermatogonia for the repopulation of the Id4-GFP-positive spermatogonia after their depletion by cytotoxic busulfan treatment. Our results therefore suggest that DMRT1 plays a dual role in SSC homeostasis, promoting both maintenance and replenishment of the SSC pool. In addition, our data demonstrate that Ngn3-positive spermatogonia can give rise to Id4-GFP positive cells and repopulate the SSC pool under conditions of stress. Based on its diverse and context-dependent functions, we propose a model in which DMRT1 functions as an essential partner for more specialized regulators of male gametogenesis.

Dmrt1-mutant SSCs can undergo differentiation
DMRT1 is expressed throughout spermatogonial development, in all A s through type B spermatogonia, and then it is silenced in preleptotene spermatocytes at the onset of meiosis [19,24]. To confirm DMRT1 expression in SSCs, we performed immunofluorescence (IF) on wholemount seminiferous tubules from mice carrying a Id4-Gfp transgene [12], using anti-DMRT1 and anti-SALL4 antibodies. All A s and A pr cells expressing Id4-GFP also were positive for DMRT1 and SALL4 (S1A-S1M Fig). To test the role of DMRT1 in SSCs, we sought to conditionally delete Dmrt1. Because A s and short-chain undifferentiated spermatogonia express Oct3/4 [27] we tested a tamoxifen-inducible Oct4-CreER transgene [28] for activity in SSCs. To identify SSCs and detect Cre activity, respectively, we included Id4-Gfp and CRE-responsive Rosa26-tdTomato transgenes [16]. Mice were treated with tamoxifen at postnatal day 8, when SSCs are abundant [17] and the mechanistically distinct first wave of spermatogenesis has already initiated [15,29]; testes were analyzed eight hours later. IF on wholemount seminiferous tubules using an anti-RFP antibody to detect tdTomato showed that many tdTomato-positive A s and A pr cells co-expressed Id4-GFP and GFRα1 and thus were putative SSCs (Fig 1A-1C). We also detected short chains of tdTomato-positive A al cells that expressed GFRα1; some were weakly positive and some negative for Id4-GFP (Fig 1A-1C). We conclude that Oct4-Cre is active in GFRα1-positive undifferentiated spermatogonia including some of the Id4-Gfp positive SSCs.
Next we used Oct4-Cre to delete Dmrt1, comparing Dmrt1 flox /+;Oct4-cre/+; tdTomato; Id4-Gfp (hereafter, "control") mice to the same strain homozygous for Dmrt1 flox (hereafter, "mutant"). Cre recombination of Dmrt1 flox removes the proximal promoter and exon 1, which contains the DNA binding domain, generating a null allele of Dmrt1 [30]. Four days posttamoxifen injection (4 DPT), IF confirmed that DMRT1 was absent from tdTomato-positive A s and A pr as well as A al cells (Fig 1D-1I). To follow the fates of undifferentiated tdTomatolabeled control and Dmrt1 mutant spermatogonia, we traced these cells using IF on sectioned tubules to detect tdTomato and cell type-specific markers, including PLZF (undifferentiated spermatogonia), SOHLH1 (differentiating spermatogonia) and SYCP3 (primary spermatocytes). At 10 DPT, tdTomato-positive cells expressing PLZF or SOHLH1 were present in both  (Fig 2A-2L), indicating that in mutants, as in controls, a proportion of undifferentiated spermatogonia could progress to SOHLH1-positive differentiating spermatogonia. At 15 DPT, tdTomato-positive cells expressing SYCP3 were observed in both the control and mutant testes, indicating that Dmrt1 mutant spermatogonia were able to enter meiosis (Fig 2M-2R). The reduced number of SYCP3-positive cells in mutants is consistent with our previous finding that Dmrt1-mutant undifferentiated spermatogonia can enter meiosis but they do so precociously, without completing the normal number of mitotic divisions [24]. Taken together, these data suggest that DMRT1 is not required for differentiation of SSCs or for initiation of meiotic prophase.

DMRT1 is required for SSC maintenance
Next, we asked whether deletion of Dmrt1 in A s , A pr and A al cells impairs SSC maintenance, which would be expected to cause a progressive loss of mutant germ cells. We followed tdTomato-positive cells for a full round of spermatogenesis (approximately 40 days) starting at 10 DPT. tdTomato-positive spermatogonia and early spermatocytes were present at 10 DPT ( Fig  3A and 3E) in both control and mutant testes. In controls, at 15, 21 and 40 DPT, tdTomatopositive late spermatocytes, round and elongated spermatids were present (Fig 3B-3D). Importantly, all tubules were labeled with tdTomato and all germ cell types became tdTomato-positive in controls by 40 DPT, indicating that spermatogenesis was maintained via tdTomatopositive SSCs. In mutant testes, by contrast, tdTomato-positive cells were completely absent from~40% of tubules at 21 DPT (N = 85/213), and from~60% by 40 DPT (N = 101/167) ( Fig  3G and 3H). After 16 DPT, spermatogonia that persisted in mutant testes expressed DMRT1, indicating that they had escaped deletion by Oct4-cre. Collectively these results indicate that deletion of Dmrt1 in A s , A pr and A al cells causes progressive loss of spermatogenesis that affects all germ cell types.
We We next investigated how SSCs are lost in mutants. TUNEL labeling at 10 and 15 DPT and activated Caspase3 staining at 12 DPT showed no apparent increase in mutants and did not detect apoptosis of Id4-GFP positive cells, suggesting that loss of spermatogonia in mutants is not due to elevated apoptosis (S3A- S3J Fig). However, apoptosis in SSCs might be infrequent and difficult to detect. We therefore examined the dynamics of spermatogenesis using lineage tracing and BrdU labeling. Specifically, we asked whether SSCs that were tdTomato-labeled by Oct4-Cre continue to contribute to spermatogenesis after Dmrt1 is deleted. In controls, Id4-GFP-positive cells were only rarely BrdU-labeled (15.3%; N>300 tubule sections); however Id4-GFP negative spermatogonia that were PLZF-positive or c-KIT-positive efficiently incorporated BrdU (61.9% and 70.8%, respectively; N>100 for each staining) (Fig 5A-5D). This differential labeling provides a means to distinguish between fates of SSCs versus other spermatogonial cell types. Next we injected BrdU at 6 DPT (N = 3 for each genotype), when SSCs were still present in mutant testes, and compared controls and mutants after a 12-day chase. In controls, the SSCs produced a population of BrdU-negative spermatogonia that replaced the differentiating BrdU-positive cells (Fig 5E and 5H). In mutants, we anticipated one of two possible outcomes after the chase. If the BrdU-negative SSCs survived but were not maintained, they would produce a transient population of BrdU-negative spermatogonia that would eventually enter meiosis ( Fig 5F). Alternatively, if the BrdU-negative mutant SSCs died, no further BrdU-negative spermatogonia would be formed and remaining germ cells would be primarily BrdU-positive ( Fig 5G). We observed the former result ( Fig 5I), with many tdTomato-positive (Dmrt1 mutant) but BrdU-negative spermatogonia present for at least 18 days after the chase. Because some Id4-GFP negative spermatogonia were BrdU negative this experiment is not definitive. However, based on the lack of detectable apoptosis and the prolonged presence of BrdU negative differentiating spermatogonia, we conclude that the loss of SSCs in Dmrt1 conditional mutants likely is due mainly to failed SSC maintenance/self-renewal rather than cell death.

DMRT1 promotes PLZF expression in A undiff spermatogonia
We next investigated the molecular basis of SSC loss in Dmrt1 mutants. A key regulator of SSC maintenance is the transcription factor PLZF, which is expressed in undifferentiated spermatogonia. In Plzf mutants spermatogenesis fails after one round in some tubules [7], similar to the phenotype of conditional Dmrt1 mutants described above. All PLZF-positive spermatogonia normally express DMRT1 and SALL4 (Fig 6A-6C). IF analysis of Dmrt1 mutant testes indicated that PLZF expression was severely reduced in DMRT1-negative and SALL4-positive mutant spermatogonia relative to nearby SALL4 and DMRT1-positive cells that escaped deletion by Oct4-cre (Fig 6D-6F). Although we cannot distinguish which of the PLZF/SALL4 double-positive cells are SSCs in this experiment, all SALL4-positive cells without DMRT1 had low PLZF expression. We therefore conclude that one function of DMRT1 in undifferentiated spermatogonia is to maintain PLZF expression, and reduced PLZF is likely to be a key contributor to SSC loss in Dmrt1 mutants.
ChIP-Seq in intact adult testes showed that DMRT1 binds near Plzf (Fig 6G). Because DMRT1 is expressed both in spermatogonia and Sertoli cells we used a high dose of busulfan (30 mg/kg) to deplete germ cells and repeated the ChIP-seq, asking whether binding was reduced in the absence of germ cells. Indeed, DMRT1 binding was substantially reduced in busulfan-treated testes. Although we cannot distinguish in which spermatogonial cells DMRT1 binds Plzf, this result indicates that most of the binding is germ cell-dependent and therefore DMRT1 may directly activate Plzf in spermatogonia (Fig 6G). The DNA sequence centered under the DMRT1 binding peak contained a DMRT1 consensus half-site rather than the canonical palindromic sequence element (Fig 6G) [31,32]. The lack of a complete canonical   cells only rarely function as SSCs during steady state, but some of them can be induced to form stable SSCs by stresses including transplantation or germ cell chemical depletion using busulfan [2,10,19]. Thus NGN3-positive spermatogonia have been suggested to provide a reserve stem cell pool for times of stress [10].
Because Dmrt1 is required perinatally to establish SSCs [23] and subsequently for SSC maintenance (this work), we asked whether it also plays a role in replenishment of SSCs from NGN3-positive spermatogonia in response to cytotoxic stress. We used a moderate dose of busulfan (20 mg/kg) to deplete most undifferentiated spermatogonia [33] and tested whether loss of Dmrt1 in Ngn3-Cre expressing cells compromises SSC regeneration. To follow cell fates we again used Rosa26-tdTomato as a lineage tracer and employed Id4-GFP to identify putative SSCs.
We first confirmed that in adult mice under steady-state conditions Ngn3-Cre expressing cells rarely contribute to the pool of Id4-GFP positive SSCs. In controls, tdTomato expression activated in Ngn3-Cre-positive undifferentiated spermatogonia could be traced through to elongated spermatids but we detected no tdTomato in Id4-GFP-positive SSCs (S4A Fig). In Dmrt1 conditional mutants, the number of differentiating spermatogonia was severely reduced by precocious meiotic initiation that occurs upon loss of Dmrt1 in NGN3-positive spermatogonia [24]. As in controls, there was no tdTomato labeling of Id4-GFP-positive spermatogonia (N>200 tubules for each genotype) (S4B Fig). Thus, in both wild-type and mutant testes, Ngn3-positive spermatogonia normally proceed to meiosis and do not form Id4-GFP-positive SSCs.
We next followed the fate of Ngn3-cre positive cells during recovery after busulfan injection. Four-week-old mice were injected with busulfan and examined 60 days post-injection, which should allow full restoration of spermatogenesis [33]. To confirm that Id4-GFP positive cells were lost after busulfan treatment, we quantified the number of Id4-GFP positive cells in crosssections from untreated and treated control and mutant testes at 7, 10 and 20 days after busulfan injection. In the untreated control and mutant testes, we detected 1.7 and 1. By 60 days post-busulfan treatment, controls had recovered abundant TRA98-expressing germ cells and spermatogenesis appeared normal in 68% of seminiferous tubules (146/216) ( Fig 7A). All major stages of spermatogonia and spermatocytes were present after recovery, as reflected by expression of PLZF, SOHLH1 and SYCP3 (Fig 7B-7D). The majority of germ cells in the recovered testes of busulfan-treated control mice, including the Id4-GFP-positive putative SSCs, expressed tdTomato (Figs 7A-7D and 8A), indicating that they were derived from Ngn3-Cre-positive spermatogonia. In contrast, 60 days post-busulfan treatment, 95% of mutant seminiferous tubules (177/187) were completely devoid of TRA98-positive germ cells and lacked Id4-GFP, PLZF-, and SOHLH1-positive spermatogonia along with SYCP3-positive primary spermatocytes (Figs 7E-7H and 8B). While Id4-GFP-positive cells were present in mutants after recovery, all of these were negative for tdTomato, indicating that they had not passed through an Ngn3-positive stage and were not derived from Dmrt1 mutant cells (Fig 8C).
A simple interpretation of our results is that replenishment of SSCs from Ngn3-positive cells requires Dmrt1. However, we considered two other possibilities. First, loss of Dmrt1 may render spermatogonia more susceptible to busulfan treatment, and thus fewer undifferentiated spermatogonia might survive to help replenish spermatogenesis in mutants. To test this possibility, we counted the number of PLZF and SALL4 double-positive undifferentiated spermatogonia at 7, 10 and 20 days post busulfan treatment in control and mutant mice. At the two earlier time points the number of PLZF/SALL4-positive spermatogonia was similar between controls and mutants (S5 Fig), indicating that undifferentiated spermatogonia were not unusually busulfan-sensitive in the mutants. At 20 days PLZF/SALL4-positive cells were starting to recover in controls but not in mutants. Second, NGN3-positive cells might be able to revert back to SSCs in the mutant but, due to lack of DMRT1, they would not be maintained and would differentiate. However, there was no evidence of an additional wave of spermatogenesis derived from such cells. Therefore a likely model is that DMRT1 is required in Ngn3positive spermatogonia for their re-expression of ID4 and re-establishment as SSCs.

Discussion
Here we have found that Dmrt1 plays two roles, both of which are expected to support SSC homeostasis, as diagrammed in Fig 8D. First, Dmrt1 is required within the SSC pool for efficient maintenance, with mutant SSCs losing PLZF expression and undergoing differentiation, resulting in a progressive loss of spermatogenesis. Second, under cytotoxic stress, Dmrt1 is required in NGN3-positive spermatogonia for renewal of the SSC pool.
In vivo lineage tracing and apoptosis assays together suggested that Dmrt1 mutant SSCs do not undergo apoptosis but instead at least some of them lose PLZF expression and undergo differentiation. The resulting deficiency in SSC self-renewal causes a gradual failure of spermatogenesis. While our data suggest that transcriptional activation of Plzf by DMRT1 may be a key component of SSC maintenance, it will be important to identify additional targets of DMRT1 regulation in this cell type. Our results suggesting survival and differentiation of Dmrt1 mutant SSCs contrast with an in vitro study that found depletion of Dmrt1 can cause apoptosis of cultured multipotent germline stem cells [34]. The different behavior of Dmrt1 mutant germ cells in these two studies might reflect differences between the stem cell microenvironment in vivo and in vitro or differences in the specific cell types studied. Given the findings here and those of prior in vivo studies suggesting that DMRT1 function in germ cells is highly context-dependent, different requirements for Dmrt1 in vivo and in cell culture are perhaps unsurprising.
Although recovery from busulfan germ cell depletion was documented decades ago [33], the genetic basis of the process is uncertain. Yoshida and colleagues [35] showed that some NGN3-positive cells can provide SSC function after damage or transplantation. It has been unclear whether damage or transplantation triggers the regeneration of normal SSCs or perhaps instead they trigger formation of a less primitive self-renewing cell population, analogous to that found in the hematopoetic cell lineage [36]. Our lineage tracing data indicate that NGN3-positive cells can give rise to Id4-GFP-positive cells after busulfan-induced cytotoxic stress, suggesting that normal SSCs are restored. These data are in good agreement with a recent study that demonstrated the recovery of ID4-positive cells after busulfan treatment but did not address the source of the new SSCs [17]. The possibility that transit-amplifying germ cells could undergo conditional reversion to SSC function was proposed previously and is consistent with our data [37,38]. In this regard SSC recovery may operate analogously to the conditional germ cell regeneration system found in the Drosophila testis [39][40][41]. However, while lineage tracing shows that the replenished Id4-GFP positive SSCs pass through an Ngn3positive state, it is important to note that we cannot yet resolve the detailed path by which SSCs are reestablished. The simplest model is that SSCs are replenished by activating latent stem cell potential in the NGN3-positive transit-amplifying cells that normally supply steady-state spermatogenesis. However, it also remains possible that SSCs are not killed by busulfan, but instead they transiently activate Ngn3 in response to germ cell depletion. In such a scenario, the disappearance of Id4-GFP positive cells that we observed after busulfan treatment might reflect a temporary switch from Id4 to Ngn3 expression. Distinguishing between these possibilities will require lineage tracing of ID4-positive cells after busulfan treatment. Also, while lineage tracing showed that Ngn3-positive cells contribute to SSC replenishment, we cannot exclude that Ngn3-negative spermatogonia also can contribute.
Regardless of the initial source of the replenishing spermatogonia, our data show that replenishment of Id4-GFP positive SSCs requires DMRT1 activity and involves NGN3-positive spermatogonia, since loss of Dmrt1 in NGN3-positive germ cells led to a complete failure to recover from busulfan treatment. We previously found that loss of Dmrt1 in NGN3-positive spermatogonia during steady state spermatogenesis in essence flips a switch, truncating the spermatogonial differentiation and mitotic proliferation program and sending spermatogonia toward meiosis [24]. DMRT1 promotes spermatogonial proliferation and differentiation by suppressing retinoic acid (RA) signaling and transcriptionally repressing the RA target Stra8 [42]. It is possible that DMRT1 acts similarly in replenishment of SSCs: mutant cells may be forced to proceed toward meiosis and thus unable to form SSCs, or they may be unable to remain undifferentiated long enough to reactivate the SSC program. The reduced expression of PLZF in Dmrt1-mutant undifferentiated spermatogonia also seems likely to limit SSC replenishment, either because SSCs cannot be formed or because they cannot be maintained once they are reestablished.
Our findings add to a surprisingly long list of essential roles for DMRT1 in germ cells and somatic cells of the gonad. The multiplicity of its functions and their context-dependence strongly suggest that DMRT1 cannot be a purely instructive regulatory factor and must serve a permissive role in some contexts. This context-dependence is particularly clear in spermatogonial development, where DMRT1 promotes maintenance of SSCs, promotes differentiation of NGN3-positive cells during steady state spermatogenesis, and promotes SSC regeneration after germ cell depletion. While some of these functions are likely to be mechanistically related, it seems likely that DMRT1 functionally interacts with other more specialized factors to accomplish these distinct roles. In this view DMRT1 would be an essential partner for regulators that act in specific cell types or physiological conditions. Working with different partners could allow different regulatory outcomes at particular sites under different conditions or could allow recognition of non-canonical DNA sequences, for example the sequence bound by DMRT1 upstream of Plzf. Identifying these hypothetical partners and defining their functions should be informative.
In summary, our findings indicate that DMRT1 is an important regulator of SSC homeostasis, acting in two distinct roles. Under normal conditions we suggest that DMRT1 promotes SSC maintenance at least in part by regulating self-renewal via activation of Plzf transcription. After busulfan-induced cytotoxic stress, DMRT1 enables Ngn3-positive germ cells to replenish the SSC pool and restore spermatogenesis. These findings provide a basis to further explore SSC homeostasis and may have relevance to male infertility.

Animals
Dmrt1 flox/flox mice were bred to either Oct4-CreERT2 [28] (gift of Dr. Yoav Segal) or Ngn3-Cre [29]; (gift of Dr. Shosei Yoshida) and to Id4-Gfp [12] and Rosa26-tdTomato transgenic mice (Jackson Laboratories Cat #: 0007914). For experiments involving conditional deletion of Dmrt1, Dmrt1 flox/+ mice were used as controls and Dmrt1 flox/flox mice were used as experimentals. Both controls and experimental animals carried the Oct4-cre transgene and were treated with tamoxifen. In busulfan depletion experiments, controls and experimental animals carried the Ngn3-cre transgene and were either Dmrt1 flox/+ (control) or Dmrt1 flox/flox (experimental). Experimental protocols were approved by the University of Minnesota Institutional Animal Care and Use Committee.

Immunofluorescent of testis tissue sections
Immunofluorescence (IF) was described [43]. Staining was performed on >5 animals from each genotype. Antibodies are listed in S1 Table. Expression of tdTomato from the cre activity reporter transgene was detected using an anti-RFP antibody.

Immunofluorescent of whole mount seminiferous tubules
Whole mount IF was described [35]. All whole mount images were captured with a LSM 710 confocal. Staining was performed on >5 animals from each genotype. Antibodies used are listed in S1 Table. BrdU incorporation and TUNEL assay BrdU incorporation and TUNEL assay were as described [24].

Busulfan administration
Busulfan administration was described [35] except that we used 4-week-old male mice and concentration of 20 mg/kg.

Tamoxifen injection
4-Hydroxy-tamoxifen injection was described [24] except that mice were injected at postnatal day 8 mice.

ChIP-seq
Chromatin from testes of adult wild-type B6 and 129Sv mixed genetic background mice was cross-linked with formaldehyde, sheared, and immunoprecipitated with anti-DMRT1 antibody as described previously [44].