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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Figure 6

Number and expression of genes likely involved in lignocellulose degradation.

The number of genes encoding mass spectrometry-identified proteins was limited to those matching≥2 unique peptides after 5–9 days growth in media containing NELP or ELP. RPKM values>100 for RNA derived from these cultures were arbitrarily selected as the threshold for high transcript levels. Genes designated as ‘regulated’ showed significant accumulation (p<0.05;>2-fold) in NELP or ELP relative to glucose containing media. Methods and complete data are presented in Text S1 and Dataset S2.

Figure 6