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The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation

Figure 7

Analysis of phylogenetic associations between conjugative systems.

The x-axis represents the pairwise evolutionary distances between VirB4 proteins (as taken from the tree in Figure 6). The histogram represents the counts in each bin of evolutionary distance (e.g. 5488 comparisons for proteins at an evolutionary distance less than 1). The line represents the frequency with which each of the two VirB4s at a given evolutionary distance belong to the same type of replicon, i.e. a plasmid or a chromosome. The line is a spline fit on the graph of pairwise evolutionary distances versus the frequency with each the two VirB4 are in the same type of replicon (i.e. both chromosomal or both plasmidic). For closely related sequences (smallest distances), the y-value is close to 100%, indicating that sequences belong to the same type of replicon. When the distance increases, the variable falls to 50%, indicating that the probability of finding a pair of VirB4 at these evolutionary distances in two chromosomes or in two plasmids is the same to that of finding them in a pair constituted by one ICE and one conjugative plasmid.

Figure 7

doi: https://doi.org/10.1371/journal.pgen.1002222.g007