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Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies

Figure 4

Tests of association on liver gene expression traits.

(A) Number of gene expression traits that were associated with SNPs on Affymetrix and Illumina microarrays at fixed FDR levels. (B) We restricted the association tests to SNPs within 1 Mb range of the gene and present the number of cis-associating gene expression traits at a given FDR level.

Figure 4