About the Authors
- Derrick E. Fouts
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* E-mail: dfouts@jcvi.org
Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Heather L. Tyler
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Affiliation Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America
- Robert T. DeBoy
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Sean Daugherty
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Qinghu Ren
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Jonathan H. Badger
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Anthony S. Durkin
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Heather Huot
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Susmita Shrivastava
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Sagar Kothari
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Robert J. Dodson
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Yasmin Mohamoud
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Hoda Khouri
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
- Luiz F. W. Roesch
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Affiliation Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America
- Karen A. Krogfelt
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Affiliation Department of Bacteriology, Mycology and Parasitology, Statens Serum Institut, Copenhagen, Denmark
- Carsten Struve
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Affiliation Department of Bacteriology, Mycology and Parasitology, Statens Serum Institut, Copenhagen, Denmark
- Eric W. Triplett
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Affiliation Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, United States of America
- Barbara A. Methé
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Affiliation J. Craig Venter Institute, Rockville, Maryland, United States of America
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Conceived and designed the experiments: DEF YM HK KAK CS EWT. Performed the experiments: HLT YM HK KAK CS. Analyzed the data: DEF HLT RTD SD QR JHB ASD HH SS SK RJD YM HK LFWR KAK CS EWT BAM. Contributed reagents/materials/analysis tools: DEF HLT RTD SD QR JHB ASD HH SS SK RJD LFWR KAK CS EWT. Wrote the paper: DEF HLT RTD QR LFWR CS EWT BAM. Performed prophage analysis, comparative genomics, plant-induced and associated genes, animal-induced genes, protein secretion systems, antibiotic resistance mechanisms, and plasmids: DEF. Performed antibiotic resistance profiles and processing of mouse model data: HLT. Performed CRISPR and IS element analysis: RTD. Performed annotation: SD ASD HH SS SK RJD. Performed small molecule transporter analysis: QR. Performed phylogenetic tree building: JHB. Performed closure/finishing of the complete genome sequence: YM HK. Performed mouse model experiments: KAK CS. Carried out metabolism section: BAM.