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Proteolysis  
PLOS Computational Biology  
Generalized Michaelis–Menten rate law with time-varying molecular concentrations

Roktaek Lim, Thomas L. P. Martin, Junghun Chae, Woo Joong Kim, Cheol-Min Ghim, Pan-Jun Kim

Research Article | published 11 Dec 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011711

Views: 1461Citations: 2Saves: 11 • Shares: 2

Protein degradation sets the fraction of active ribosomes at vanishing growth

Ludovico Calabrese, Jacopo Grilli, Matteo Osella, Christopher P. Kempes, Marco Cosentino Lagomarsino, Luca Ciandrini

Research Article | published 02 May 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010059

Views: 3403Citations: 21Saves: 29 • Shares: 17

Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle

Chunrui Xu, Henry Hollis, Michelle Dai, Xiangyu Yao, Layne T. Watson, Yang Cao, Minghan Chen

Research Article | published 28 Jan 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009847

Views: 1993Citations: 3Saves: 8 • Shares: 2

Controlling gene expression timing through gene regulatory architecture

Md Zulfikar Ali, Robert C. Brewster

Research Article | published 18 Jan 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009745

Views: 4212Citations: 8Saves: 39 • Shares: 9

Quantitative profiling of protease specificity

Boris I. Ratnikov, Piotr Cieplak, Albert G. Remacle, Elise Nguyen, Jeffrey W. Smith

Research Article | published 22 Feb 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008101

Views: 3221Citations: 9Saves: 0 • Shares: 0

Design principles for the glycoprotein quality control pathway

Aidan I. Brown, Elena F. Koslover

Research Article | published 01 Feb 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008654

Views: 1975Citations: 5Saves: 19 • Shares: 2

A multiscale model of complex endothelial cell dynamics in early angiogenesis

Daria Stepanova, Helen M. Byrne, Philip K. Maini, Tomás Alarcón

Research Article | published 07 Jan 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008055

Views: 4180Citations: 36Saves: 50 • Shares: 1

Crosstalk and ultrasensitivity in protein degradation pathways

Abhishek Mallela, Maulik K. Nariya, Eric J. Deeds

Research Article | published 28 Dec 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008492

Views: 2152Citations: 5Saves: 18 • Shares: 5

A Computational Framework for Analyzing Stochasticity in Gene Expression

Marc S. Sherman, Barak A. Cohen

Research Article | published 08 May 2014 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1003596

Views: 6127Citations: 25Saves: 89 • Shares: 4

Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis

Clémentine Dressaire, Christophe Gitton, Pascal Loubière, Véronique Monnet, Isabelle Queinnec, Muriel Cocaign-Bousquet

Research Article | published 18 Dec 2009 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1000606

Views: 7221Citations: 37Saves: 0 • Shares: 0

Oscillatory Regulation of Hes1: Discrete Stochastic Delay Modelling and Simulation

Manuel Barrio, Kevin Burrage, André Leier, Tianhai Tian

Research Article | published 08 Sep 2006 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.0020117

Views: 10184Citations: 250Saves: 157 • Shares: 2

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