- Integrative pan-cancer analysis reveals a common architecture of dysregulated transcriptional networks characterized by loss of enhancer methylation
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Research Article | published 18 Nov 2024 PLOS Computational Biology
- Identification of a serum proteomic biomarker panel using diagnosis specific ensemble learning and symptoms for early pancreatic cancer detection
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Research Article | published 29 Aug 2024 PLOS Computational Biology
- Kernel Bayesian logistic tensor decomposition with automatic rank determination for predicting multiple types of miRNA-disease associations
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Research Article | published 08 Jul 2024 PLOS Computational Biology
- An integrated model for predicting KRAS dependency
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Research Article | published 04 May 2023 PLOS Computational Biology
- Examining the efficacy of localised gemcitabine therapy for the treatment of pancreatic cancer using a hybrid agent-based model
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Research Article | published 17 Jan 2023 PLOS Computational Biology
- ToMExO: A probabilistic tree-structured model for cancer progression
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Research Article | published 05 Dec 2022 PLOS Computational Biology
- DSCN: Double-target selection guided by CRISPR screening and network
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Research Article | published 19 Aug 2022 PLOS Computational Biology
- Designing optimal allocations for cancer screening using queuing network models
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Research Article | published 27 May 2022 PLOS Computational Biology
- Multi-targeting of K-Ras domains and mutations by peptide and small molecule inhibitors
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Research Article | published 26 Apr 2022 PLOS Computational Biology
- AIME: Autoencoder-based integrative multi-omics data embedding that allows for confounder adjustments
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Research Article | published 26 Jan 2022 PLOS Computational Biology
- Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts
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Research Article | published 20 Jul 2021 PLOS Computational Biology
- De novo mutational signature discovery in tumor genomes using SparseSignatures
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Research Article | published 28 Jun 2021 PLOS Computational Biology
- Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements
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Research Article | published 01 Mar 2021 PLOS Computational Biology
- A mathematical model of the metastatic bottleneck predicts patient outcome and response to cancer treatment
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Research Article | published 02 Oct 2020 PLOS Computational Biology
- SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways
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Research Article | published 25 Oct 2019 PLOS Computational Biology
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