- DNA spontaneously wrapping around a histone core prefers negative supercoiling: A Brownian dynamics study
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Research Article | published 28 Jan 2025 PLOS Computational Biology
- Role of diffusion and reaction of the constituents in spreading of histone modification marks
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Research Article | published 11 Jul 2024 PLOS Computational Biology
- A genome-wide comprehensive analysis of nucleosome positioning in yeast
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Research Article | published 24 Jan 2024 PLOS Computational Biology
- Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation
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Methods | published 20 Nov 2023 PLOS Computational Biology
- Combining molecular dynamics simulations and scoring method to computationally model ubiquitylated linker histones in chromatosomes
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Research Article | published 01 Aug 2023 PLOS Computational Biology
- An associative memory Hamiltonian model for DNA and nucleosomes
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Research Article | published 27 Mar 2023 PLOS Computational Biology
- A quantitative modelling approach for DNA repair on a population scale
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Research Article | published 12 Sep 2022 PLOS Computational Biology
- NucleoMap: A computational tool for identifying nucleosomes in ultra-high resolution contact maps
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Research Article | published 14 Jul 2022 PLOS Computational Biology
- Epigenetic cell memory: The gene’s inner chromatin modification circuit
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Research Article | published 06 Apr 2022 PLOS Computational Biology
- High fidelity epigenetic inheritance: Information theoretic model predicts threshold filling of histone modifications post replication
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Research Article | published 17 Feb 2022 PLOS Computational Biology
- Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts
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Research Article | published 10 Feb 2022 PLOS Computational Biology
- The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function
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Research Article | published 08 Nov 2021 PLOS Computational Biology
- Computational identification and experimental characterization of preferred downstream positions in human core promoters
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Research Article | published 12 Aug 2021 PLOS Computational Biology
- The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study
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Research Article | published 27 Jul 2021 PLOS Computational Biology
- Histone tails cooperate to control the breathing of genomic nucleosomes
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Research Article | published 03 Jun 2021 PLOS Computational Biology
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