- Large scale paired antibody language models
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Research Article | published 06 Dec 2024 PLOS Computational Biology
- Rapid prediction of key residues for foldability by machine learning model enables the design of highly functional libraries with hyperstable constrained peptide scaffolds
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Research Article | published 18 Nov 2024 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1012609
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- Ten simple rules for the sharing of bacterial genotype—Phenotype data on antimicrobial resistance
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Education | published 22 Jun 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011129
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- HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph
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Research Article | published 07 Jun 2023 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1011148
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- AC-PCoA: Adjustment for confounding factors using principal coordinate analysis
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Research Article | published 13 Jul 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010184
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- The accuracy of absolute differential abundance analysis from relative count data
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Research Article | published 11 Jul 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1010284
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- SavvyCNV: Genome-wide CNV calling from off-target reads
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Research Article | published 16 Mar 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009940
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- Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data
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Research Article | published 17 Feb 2022 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009269
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- MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data
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Research Article | published 11 Nov 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009594
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- Bioinformatics in Sudan: Status and challenges case study: The National University-Sudan
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Education | published 21 Oct 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1009462
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- VCF2CAPS–A high-throughput CAPS marker design from VCF files and its test-use on a genotyping-by-sequencing (GBS) dataset
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Research Article | published 20 May 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008980
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- Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads
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Research Article | published 19 Apr 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008926
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- PASA: Proteomic analysis of serum antibodies web server
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Research Article | published 25 Jan 2021 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008607
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- NGS-PrimerPlex: High-throughput primer design for multiplex polymerase chain reactions
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Research Article | published 30 Dec 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008468
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- Using B cell receptor lineage structures to predict affinity
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Research Article | published 11 Nov 2020 PLOS Computational Biology
https://doi.org/10.1371/journal.pcbi.1008391
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