- Large scale paired antibody language models
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Research Article | published 06 Dec 2024 PLOS Computational Biology
- Structural comparison of homologous protein-RNA interfaces reveals widespread overall conservation contrasted with versatility in polar contacts
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Research Article | published 03 Dec 2024 PLOS Computational Biology
- Evolutionary analyses of intrinsically disordered regions reveal widespread signals of conservation
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Research Article | published 25 Apr 2024 PLOS Computational Biology
- A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution
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Research Article | published 24 Apr 2024 PLOS Computational Biology
- Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment
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Research Article | published 17 Nov 2023 PLOS Computational Biology
- Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution
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Research Article | published 07 Aug 2023 PLOS Computational Biology
- RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure
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Research Article | published 14 Jul 2023 PLOS Computational Biology
- Pleiotropy promotes the evolution of inducible immune responses in a model of host-pathogen coevolution
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Research Article | published 06 Apr 2023 PLOS Computational Biology
- Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates
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Research Article | published 24 Mar 2023 PLOS Computational Biology
- Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers
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Research Article | published 23 Mar 2023 PLOS Computational Biology
- Inferring protein fitness landscapes from laboratory evolution experiments
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Research Article | published 01 Mar 2023 PLOS Computational Biology
- Plausible pathway for a host-parasite molecular replication network to increase its complexity through Darwinian evolution
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Research Article | published 01 Dec 2022 PLOS Computational Biology
- Getting higher on rugged landscapes: Inversion mutations open access to fitter adaptive peaks in NK fitness landscapes
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Research Article | published 31 Oct 2022 PLOS Computational Biology
- DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets
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Research Article | published 19 Oct 2022 PLOS Computational Biology
- Evolution of tunnels in α/β-hydrolase fold proteins—What can we learn from studying epoxide hydrolases?
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Research Article | published 17 May 2022 PLOS Computational Biology
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