- Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1
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Research Article | published 29 Mar 2024 PLOS Computational Biology
- Mutational signature dynamics indicate SARS-CoV-2’s evolutionary capacity is driven by host antiviral molecules
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Research Article | published 25 Jan 2024 PLOS Computational Biology
- PandoGen: Generating complete instances of future SARS-CoV-2 sequences using Deep Learning
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Research Article | published 19 Jan 2024 PLOS Computational Biology
- A spatial vaccination strategy to reduce the risk of vaccine-resistant variants
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Research Article | published 10 Aug 2022 PLOS Computational Biology
- Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence
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Research Article | published 08 Jun 2022 PLOS Computational Biology
- Mutational analysis of SARS-CoV-2 variants of concern reveals key tradeoffs between receptor affinity and antibody escape
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Research Article | published 31 May 2022 PLOS Computational Biology
- Predicted impact of the viral mutational landscape on the cytotoxic response against SARS-CoV-2
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Research Article | published 10 Feb 2022 PLOS Computational Biology
- A proposed workflow for proactive virus surveillance and prediction of variants for vaccine design
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Perspective | published 16 Dec 2021 PLOS Computational Biology
- Why are viral genomes so fragile? The bottleneck hypothesis
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Research Article | published 08 Jul 2021 PLOS Computational Biology
- How does feedback from phage infections influence the evolution of phase variation in Campylobacter?
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Research Article | published 14 Jun 2021 PLOS Computational Biology
- Insights on cross-species transmission of SARS-CoV-2 from structural modeling
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Research Article | published 03 Dec 2020 PLOS Computational Biology
- Modeling the efficiency of filovirus entry into cells in vitro: Effects of SNP mutations in the receptor molecule
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Research Article | published 28 Sep 2020 PLOS Computational Biology
- Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications
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Research Article | published 29 May 2020 PLOS Computational Biology
- Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial
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Research Article | published 10 Apr 2020 PLOS Computational Biology
- Early prediction of antigenic transitions for influenza A/H3N2
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Research Article | published 18 Feb 2020 PLOS Computational Biology
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