- Dose-dependent interaction of parasites with tiers of host defense predicts “wormholes” that prolong infection at intermediate inoculum sizes
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Research Article | published 06 Dec 2024 PLOS Computational Biology
- The evolutionary cost of homophily: Social stratification facilitates stable variant coexistence and increased rates of evolution in host-associated pathogens
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Research Article | published 22 Nov 2024 PLOS Computational Biology
- Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks
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Methods | published 18 Sep 2024 PLOS Computational Biology
- Imaging with spatio-temporal modelling to characterize the dynamics of plant-pathogen lesions
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Research Article | published 20 Nov 2023 PLOS Computational Biology
- Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes
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Research Article | published 06 Jul 2023 PLOS Computational Biology
- The proportion of resistant hosts in mixtures should be biased towards the resistance with the lowest breaking cost
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Research Article | published 25 May 2023 PLOS Computational Biology
- Heterogeneity of Rift Valley fever virus transmission potential across livestock hosts, quantified through a model-based analysis of host viral load and vector infection
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Research Article | published 22 Jul 2022 PLOS Computational Biology
- Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence
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Research Article | published 08 Jun 2022 PLOS Computational Biology
- In silico prediction of HIV-1-host molecular interactions and their directionality
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Research Article | published 08 Feb 2022 PLOS Computational Biology
- Evolution of phenotypic fluctuation under host-parasite interactions
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Research Article | published 09 Nov 2021 PLOS Computational Biology
- Molecular signatures of silencing suppression degeneracy from a complex RNA virus
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Research Article | published 28 Jun 2021 PLOS Computational Biology
- A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes’ interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19
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Research Article | published 08 Mar 2021 PLOS Computational Biology
- Bacteria use structural imperfect mimicry to hijack the host interactome
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Research Article | published 04 Dec 2020 PLOS Computational Biology
- Within-host mechanisms of immune regulation explain the contrasting dynamics of two helminth species in both single and dual infections
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Research Article | published 23 Nov 2020 PLOS Computational Biology
- Predicting host taxonomic information from viral genomes: A comparison of feature representations
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Research Article | published 26 May 2020 PLOS Computational Biology
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