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Host-pathogen interactions  
PLOS Computational Biology  
Dose-dependent interaction of parasites with tiers of host defense predicts “wormholes” that prolong infection at intermediate inoculum sizes

Andrea L. Graham, Roland R. Regoes

Research Article | published 06 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012652

Views: 313Citations: 0Saves: 0 • Shares: 0

The evolutionary cost of homophily: Social stratification facilitates stable variant coexistence and increased rates of evolution in host-associated pathogens

Shuanger Li, Davorka Gulisija, Oana Carja

Research Article | published 22 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012619

Views: 324Citations: 0Saves: 0 • Shares: 3

Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks

G. Eric Bastien, Rachel N. Cable, Cecelia Batterbee, A. J. Wing, Luis Zaman, Melissa B. Duhaime

Methods | published 18 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011649

Views: 1889Citations: 2Saves: 0 • Shares: 2

Imaging with spatio-temporal modelling to characterize the dynamics of plant-pathogen lesions

Melen Leclerc, Stéphane Jumel, Frédéric M. Hamelin, Rémi Treilhaud, Nicolas Parisey, Youcef Mammeri

Research Article | published 20 Nov 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011627

Views: 1105Citations: 3Saves: 0 • Shares: 0

Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes

Shaoke Lou, Mingjun Yang, Tianxiao Li, Weihao Zhao, Hannah Cevasco, Yucheng T. Yang, Mark Gerstein

Research Article | published 06 Jul 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011222

Views: 1043Citations: 1Saves: 9 • Shares: 10

The proportion of resistant hosts in mixtures should be biased towards the resistance with the lowest breaking cost

Pauline Clin, Frédéric Grognard, Didier Andrivon, Ludovic Mailleret, Frédéric M. Hamelin

Research Article | published 25 May 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011146

Views: 1029Citations: 1Saves: 4 • Shares: 3

Heterogeneity of Rift Valley fever virus transmission potential across livestock hosts, quantified through a model-based analysis of host viral load and vector infection

Hélène Cecilia, Roosmarie Vriens, Paul J. Wichgers Schreur, Mariken M. de Wit, Raphaëlle Métras, Pauline Ezanno, Quirine A. ten Bosch

Research Article | published 22 Jul 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010314

Views: 2496Citations: 10Saves: 28 • Shares: 3

Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence

Fateme Pourhasanzade, Swami Iyer, Jesslyn Tjendra, Lotta Landor, Selina Våge

Research Article | published 08 Jun 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010228

Views: 1501Citations: 4Saves: 11 • Shares: 13

In silico prediction of HIV-1-host molecular interactions and their directionality

Haiting Chai, Quan Gu, Joseph Hughes, David L. Robertson

Research Article | published 08 Feb 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009720

Views: 2372Citations: 4Saves: 23 • Shares: 18

Evolution of phenotypic fluctuation under host-parasite interactions

Naoto Nishiura, Kunihiko Kaneko

Research Article | published 09 Nov 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008694

Views: 1988Citations: 2Saves: 13 • Shares: 2

Molecular signatures of silencing suppression degeneracy from a complex RNA virus

Silvia Ambrós, Neus Gómez-Muñoz, Silvia Giménez-Santamarina, Javier Sánchez-Vicente, Josep Navarro-López, Fernando Martínez, José-Antonio Daròs, Guillermo Rodrigo

Research Article | published 28 Jun 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009166

Views: 1888Citations: 4Saves: 7 • Shares: 5

A network-informed analysis of SARS-CoV-2 and hemophagocytic lymphohistiocytosis genes’ interactions points to Neutrophil extracellular traps as mediators of thrombosis in COVID-19

Jun Ding, David Earl Hostallero, Mohamed Reda El Khili, Gregory Joseph Fonseca, Simon Milette, Nuzha Noorah, Myriam Guay-Belzile, Jonathan Spicer, Noriko Daneshtalab, Martin Sirois, Karine Tremblay, Amin Emad, Simon Rousseau

Research Article | published 08 Mar 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008810

Views: 2825Citations: 20Saves: 78 • Shares: 0

Bacteria use structural imperfect mimicry to hijack the host interactome

Natalia Sanchez de Groot, Marc Torrent Burgas

Research Article | published 04 Dec 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008395

Views: 3237Citations: 14Saves: 29 • Shares: 5

Within-host mechanisms of immune regulation explain the contrasting dynamics of two helminth species in both single and dual infections

Chiara Vanalli, Lorenzo Mari, Lorenzo Righetto, Renato Casagrandi, Marino Gatto, Isabella M. Cattadori

Research Article | published 23 Nov 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008438

Views: 2330Citations: 9Saves: 13 • Shares: 2

Predicting host taxonomic information from viral genomes: A comparison of feature representations

Francesca Young, Simon Rogers, David L. Robertson

Research Article | published 26 May 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007894

Views: 6945Citations: 42Saves: 95 • Shares: 37

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