- Role of diffusion and reaction of the constituents in spreading of histone modification marks
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Research Article | published 11 Jul 2024 PLOS Computational Biology
- Learning Micro-C from Hi-C with diffusion models
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Research Article | published 17 May 2024 PLOS Computational Biology
- Diffusion controls local versus dispersed inheritance of histones during replication and shapes epigenomic architecture
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Research Article | published 18 Dec 2023 PLOS Computational Biology
- Analyzing histone ChIP-seq data with a bin-based probability of being signal
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Research Article | published 20 Oct 2023 PLOS Computational Biology
- Epigenetic cell memory: The gene’s inner chromatin modification circuit
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Research Article | published 06 Apr 2022 PLOS Computational Biology
- High fidelity epigenetic inheritance: Information theoretic model predicts threshold filling of histone modifications post replication
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Research Article | published 17 Feb 2022 PLOS Computational Biology
- Differential contribution to gene expression prediction of histone modifications at enhancers or promoters
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Research Article | published 02 Sep 2021 PLOS Computational Biology
- Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads
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Research Article | published 19 Apr 2021 PLOS Computational Biology
- Epigenome-based splicing prediction using a recurrent neural network
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Research Article | published 25 Jun 2020 PLOS Computational Biology
- ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets
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Research Article | published 24 Jan 2020 PLOS Computational Biology
- Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features
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Research Article | published 11 Sep 2019 PLOS Computational Biology
- Predicting three-dimensional genome organization with chromatin states
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Research Article | published 10 Jun 2019 PLOS Computational Biology
- Spatial clustering and common regulatory elements correlate with coordinated gene expression
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Research Article | published 01 Mar 2019 PLOS Computational Biology
- Exploring chromatin hierarchical organization via Markov State Modelling
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Research Article | published 31 Dec 2018 PLOS Computational Biology
- A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome
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Research Article | published 26 Dec 2018 PLOS Computational Biology
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