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Epidemiology  
PLOS Computational Biology  
Multi-region infectious disease prediction modeling based on spatio-temporal graph neural network and the dynamic model

Xiaoyi Wang, Zhen Jin

Research Article | published 09 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012738

Views: 443Citations: 0Saves: 0 • Shares: 4

Aggregating multiple test results to improve medical decision-making

Lucas Böttcher, Maria R. D’Orsogna, Tom Chou

Research Article | published 07 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012749

Views: 490Citations: 0Saves: 0 • Shares: 2

BharatSim: An agent-based modelling framework for India

Philip Cherian, Jayanta Kshirsagar, Bhavesh Neekhra, Gaurav Deshkar, Harshal Hayatnagarkar, Kshitij Kapoor, Chandrakant Kaski, Ganesh Kathar, Swapnil Khandekar, Saurabh Mookherjee, Praveen Ninawe, Riz Fernando Noronha, Pranjal Ranka, Vaibhhav Sinha, Tina Vinod, Chhaya Yadav, Debayan Gupta, Gautam I. Menon

Software | published 30 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012682

Views: 941Citations: 0Saves: 0 • Shares: 33

Estimating the time-varying effective reproduction number via Cycle Threshold-based Transformer

Xin-Yu Zhang, Lan-Lan Yu, Wei-Yi Wang, Gui-Quan Sun, Jian-Cheng Lv, Tao Zhou, Quan-Hui Liu

Research Article | published 23 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012694

Views: 368Citations: 0Saves: 0 • Shares: 0

Machine learning mathematical models for incidence estimation during pandemics

Oscar Fajardo-Fontiveros, Mattia Mattei, Giulio Burgio, Clara Granell, Sergio Gómez, Alex Arenas, Marta Sales-Pardo, Roger Guimerà

Research Article | published 23 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012687

Views: 702Citations: 0Saves: 0 • Shares: 9

Surveillance for TB drug resistance using routine rapid diagnostic testing data: Methodological development and application in Brazil

Sarah E. Baum, Daniele M. Pelissari, Fernanda Dockhorn Costa, Luiza O. Harada, Mauro Sanchez, Patricia Bartholomay, Ted Cohen, Marcia C. Castro, Nicolas A. Menzies

Research Article | published 23 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012662

Views: 307Citations: 0Saves: 0 • Shares: 0

Response to comment on: Toward an optimal contraception dosing strategy

Brenda Lyn A. Gavina, Aurelio A. de los Reyes V, Mette S. Olufsen, Suzanne Lenhart, Johnny T. Ottesen

Formal Comment | published 18 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012649

Views: 249Citations: 0Saves: 0 • Shares: 0

Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios

Henrik Zunker, René Schmieding, David Kerkmann, Alain Schengen, Sophie Diexer, Rafael Mikolajczyk, Michael Meyer-Hermann, Martin J. Kühn

Research Article | published 16 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012630

Views: 427Citations: 1Saves: 0 • Shares: 3

Preserving friendships in school contacts: An algorithm to construct synthetic temporal networks for epidemic modelling

Lucille Calmon, Elisabetta Colosi, Giulia Bassignana, Alain Barrat, Vittoria Colizza

Research Article | published 09 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012661

Views: 515Citations: 0Saves: 0 • Shares: 3

Modelling the effectiveness of antiviral treatment strategies to prevent household transmission of acute respiratory viruses

Hind Zaaraoui, Clarisse Schumer, Xavier Duval, Bruno Hoen, Lulla Opatowski, Jérémie Guedj

Research Article | published 05 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012573

Views: 577Citations: 0Saves: 0 • Shares: 0

Public surface disinfection every 2 hours can reduce the infection risk of norovirus in airports up to 83%

Nan Zhang, Linan Zhuang, Marco-Felipe King, Hua Qian, Min Zhu

Research Article | published 05 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012561

Views: 694Citations: 0Saves: 1 • Shares: 1

Social conformity is a heuristic when individual risky decision-making is disrupted

Mark A. Orloff, Dongil Chung, Xiaosi Gu, Xingchao Wang, Zhixian Gao, Guiding Song, Chandana Tatineni, Shuai Xu, Brooks Casas, Pearl H. Chiu

Research Article | published 02 Dec 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012602

Views: 1166Citations: 0Saves: 3 • Shares: 3

Deep neural networks for endemic measles dynamics: Comparative analysis and integration with mechanistic models

Wyatt G. Madden, Wei Jin, Benjamin Lopman, Andreas Zufle, Benjamin Dalziel, C. Jessica E. Metcalf, Bryan T. Grenfell, Max S. Y. Lau

Research Article | published 21 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012616

Views: 1208Citations: 0Saves: 7 • Shares: 1

A framework for counterfactual analysis, strategy evaluation, and control of epidemics using reproduction number estimates

Baike She, Rebecca Lee Smith, Ian Pytlarz, Shreyas Sundaram, Philip E. Paré

Research Article | published 20 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012569

Views: 588Citations: 0Saves: 0 • Shares: 0

Efficient modelling of infectious diseases in wildlife: A case study of bovine tuberculosis in wild badgers

Evandro Konzen, Richard J. Delahay, Dave J. Hodgson, Robbie A. McDonald, Ellen Brooks Pollock, Simon E. F. Spencer, Trevelyan J. McKinley

Research Article | published 19 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012592

Views: 656Citations: 0Saves: 0 • Shares: 2

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