- Mathematical basis and toolchain for hierarchical optimization of biochemical networks
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Methods | published 02 Dec 2024 PLOS Computational Biology
- Fixation times on directed graphs
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Research Article | published 18 Jul 2024 PLOS Computational Biology
- Quantifying the distribution of feature values over data represented in arbitrary dimensional spaces
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Research Article | published 04 Jan 2024 PLOS Computational Biology
- Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay
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Software | published 27 Nov 2023 PLOS Computational Biology
- Functional and spatial rewiring principles jointly regulate context-sensitive computation
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Research Article | published 11 Aug 2023 PLOS Computational Biology
- iPiDA-SWGCN: Identification of piRNA-disease associations based on Supplementarily Weighted Graph Convolutional Network
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Research Article | published 20 Jun 2023 PLOS Computational Biology
- Sparse RNNs can support high-capacity classification
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Research Article | published 14 Dec 2022 PLOS Computational Biology
- Statistical perspective on functional and causal neural connectomics: The Time-Aware PC algorithm
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Research Article | published 14 Nov 2022 PLOS Computational Biology
- iPiDA-LTR: Identifying piwi-interacting RNA-disease associations based on Learning to Rank
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Research Article | published 15 Aug 2022 PLOS Computational Biology
- Global dynamics of microbial communities emerge from local interaction rules
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Research Article | published 04 Mar 2022 PLOS Computational Biology
- Discovering adaptation-capable biological network structures using control-theoretic approaches
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Research Article | published 21 Jan 2022 PLOS Computational Biology
- SCMFMDA: Predicting microRNA-disease associations based on similarity constrained matrix factorization
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Research Article | published 12 Jul 2021 PLOS Computational Biology
- What do Eulerian and Hamiltonian cycles have to do with genome assembly?
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Education | published 20 May 2021 PLOS Computational Biology
- Causal network inference from gene transcriptional time-series response to glucocorticoids
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Research Article | published 29 Jan 2021 PLOS Computational Biology
- Flux-based hierarchical organization of Escherichia coli’s metabolic network
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Research Article | published 20 Apr 2020 PLOS Computational Biology
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