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Trajectory inference from single-cell genomics data with a process time model

Meichen Fang, Gennady Gorin, Lior Pachter

Research Article | published 21 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012752

Views: 478Citations: 0Saves: 0 • Shares: 11

HighDimMixedModels.jl: Robust high-dimensional mixed-effects models across omics data

Evan Gorstein, Rosa Aghdam, Claudia Solís-Lemus

Research Article | published 13 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012143

Views: 289Citations: 0Saves: 0 • Shares: 0

Bayesian active sound localisation: To what extent do humans perform like an ideal-observer?

Glen McLachlan, Piotr Majdak, Jonas Reijniers, Michael Mihocic, Herbert Peremans

Research Article | published 07 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012108

Views: 392Citations: 0Saves: 0 • Shares: 0

Co-contraction embodies uncertainty: An optimal feedforward strategy for robust motor control

Bastien Berret, Dorian Verdel, Etienne Burdet, Frédéric Jean

Research Article | published 20 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012598

Views: 575Citations: 0Saves: 0 • Shares: 0

GeM-LR: Discovering predictive biomarkers for small datasets in vaccine studies

Lin Lin, Rachel L. Spreng, Kelly E. Seaton, S. Moses Dennison, Lindsay C. Dahora, Daniel J. Schuster, Sheetal Sawant, Peter B. Gilbert, Youyi Fong, Neville Kisalu, Andrew J. Pollard, Georgia D. Tomaras, Jia Li

Research Article | published 14 Nov 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012581

Views: 459Citations: 0Saves: 0 • Shares: 0

Computational joint action: Dynamical models to understand the development of joint coordination

Cecilia De Vicariis, Vinil T. Chackochan, Laura Bandini, Eleonora Ravaschio, Vittorio Sanguineti

Research Article | published 22 Oct 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011948

Views: 500Citations: 0Saves: 4 • Shares: 1

Regularizing hyperparameters of interacting neural signals in the mouse cortex reflect states of arousal

Dmitry R. Lyamzin, Andrea Alamia, Mohammad Abdolrahmani, Ryo Aoki, Andrea Benucci

Research Article | published 15 Oct 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012478

Views: 561Citations: 0Saves: 1 • Shares: 3

Impact of phylogeny on the inference of functional sectors from protein sequence data

Nicola Dietler, Alia Abbara, Subham Choudhury, Anne-Florence Bitbol

Research Article | published 23 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012091

Views: 841Citations: 0Saves: 0 • Shares: 3

SEMbap: Bow-free covariance search and data de-correlation

Mario Grassi, Barbara Tarantino

Research Article | published 11 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012448

Views: 479Citations: 0Saves: 0 • Shares: 0

Learning to integrate parts for whole through correlated neural variability

Zhichao Zhu, Yang Qi, Wenlian Lu, Jianfeng Feng

Research Article | published 03 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012401

Views: 1049Citations: 0Saves: 0 • Shares: 0

Modeling soybean growth: A mixed model approach

Maud Delattre, Yusuke Toda, Jessica Tressou, Hiroyoshi Iwata

Methods | published 11 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011258

Views: 668Citations: 0Saves: 6 • Shares: 2

Kernel Bayesian logistic tensor decomposition with automatic rank determination for predicting multiple types of miRNA-disease associations

Yingjun Ma, Yuanyuan Ma

Research Article | published 08 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012287

Views: 662Citations: 0Saves: 0 • Shares: 0

Dissecting Bayes: Using influence measures to test normative use of probability density information derived from a sample

Keiji Ota, Laurence T. Maloney

Research Article | published 01 May 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011999

Views: 943Citations: 1Saves: 4 • Shares: 4

Bayesian inference of structured latent spaces from neural population activity with the orthogonal stochastic linear mixing model

Rui Meng, Kristofer E. Bouchard

Research Article | published 26 Apr 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011975

Views: 905Citations: 0Saves: 8 • Shares: 0

Predictive coding networks for temporal prediction

Beren Millidge, Mufeng Tang, Mahyar Osanlouy, Nicol S. Harper, Rafal Bogacz

Research Article | published 01 Apr 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011183

Views: 3259Citations: 12Saves: 28 • Shares: 5

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