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PLOS Computational Biology  
Deciphering the interplay between biology and physics with a finite element method-implemented vertex organoid model: A tool for the mechanical analysis of cell behavior on a spherical organoid shell

Julien Laussu, Deborah Michel, Léa Magne, Stephane Segonds, Steven Marguet, Dimitri Hamel, Muriel Quaranta-Nicaise, Frederick Barreau, Emmanuel Mas, Vincent Velay, Florian Bugarin, Audrey Ferrand

Research Article | published 10 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012681

Views: 436Citations: 0Saves: 0 • Shares: 0

Study of impacts of two types of cellular aging on the yeast bud morphogenesis

Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber

Research Article | published 30 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012491

Views: 837Citations: 0Saves: 0 • Shares: 0

Diffusion model predicts the geometry of actin cytoskeleton from cell morphology

Honghan Li, Shiyou Liu, Shinji Deguchi, Daiki Matsunaga

Research Article | published 05 Aug 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012312

Views: 1243Citations: 0Saves: 11 • Shares: 5

Derivation and simulation of a computational model of active cell populations: How overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces affect alignment

Vivienne Leech, Fiona N. Kenny, Stefania Marcotti, Tanya J. Shaw, Brian M. Stramer, Angelika Manhart

Research Article | published 29 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011879

Views: 2222Citations: 3Saves: 0 • Shares: 0

Simulation of Soluble and Bound VEGF-stimulated in vitro Capillary-like Network Formation on Deformed Substrate

Hsun Chiang, Chih-Ang Chung

Research Article | published 22 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012281

Views: 492Citations: 1Saves: 0 • Shares: 0

Data–driven modelling makes quantitative predictions regarding bacteria surface motility

Daniel L. Barton, Yow-Ren Chang, William Ducker, Jure Dobnikar

Research Article | published 14 May 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012063

Views: 679Citations: 0Saves: 0 • Shares: 0

Effective mechanical potential of cell–cell interaction explains three-dimensional morphologies during early embryogenesis

Hiroshi Koyama, Hisashi Okumura, Atsushi M. Ito, Kazuyuki Nakamura, Tetsuhisa Otani, Kagayaki Kato, Toshihiko Fujimori

Research Article | published 07 Aug 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011306

Views: 1775Citations: 9Saves: 15 • Shares: 9

Adaptive multi-objective control explains how humans make lateral maneuvers while walking

David M. Desmet, Joseph P. Cusumano, Jonathan B. Dingwell

Research Article | published 14 Nov 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010035

Views: 2176Citations: 14Saves: 19 • Shares: 12

Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance

Mikahl Banwarth-Kuhn, Kevin Rodriguez, Christian Michael, Calvin-Khang Ta, Alexander Plong, Eric Bourgain-Chang, Ali Nematbakhsh, Weitao Chen, Amit Roy-Chowdhury, G. Venugopala Reddy, Mark Alber

Research Article | published 21 Jun 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010199

Views: 2169Citations: 8Saves: 17 • Shares: 1

Analysis of emergent patterns in crossing flows of pedestrians reveals an invariant of ‘stripe’ formation in human data

Pratik Mullick, Sylvain Fontaine, Cécile Appert-Rolland, Anne-Hélène Olivier, William H. Warren, Julien Pettré

Research Article | published 09 Jun 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010210

Views: 1897Citations: 22Saves: 8 • Shares: 3

Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia

James J. Winkle, Bhargav R. Karamched, Matthew R. Bennett, William Ott, Krešimir Josić

Research Article | published 22 Sep 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009381

Views: 1983Citations: 21Saves: 17 • Shares: 11

Effect of cellular rearrangement time delays on the rheology of vertex models for confluent tissues

Gonca Erdemci-Tandogan, M. Lisa Manning

Research Article | published 07 Jun 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1009049

Views: 3162Citations: 25Saves: 38 • Shares: 5

Physical constraints on early blastomere packings

James Giammona, Otger Campàs

Research Article | published 26 Jan 2021 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007994

Views: 2438Citations: 17Saves: 28 • Shares: 34

Computational estimates of mechanical constraints on cell migration through the extracellular matrix

Ondrej Maxian, Alex Mogilner, Wanda Strychalski

Research Article | published 27 Aug 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1008160

Views: 3183Citations: 10Saves: 28 • Shares: 11

Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs

Tessa Altair Morris, Jasmine Naik, Kirby Sinclair Fibben, Xiangduo Kong, Tohru Kiyono, Kyoko Yokomori, Anna Grosberg

Research Article | published 04 Mar 2020 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1007676

Views: 12947Citations: 41Saves: 75 • Shares: 4

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