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Approximation methods  
PLOS Computational Biology  
Optimal control of agent-based models via surrogate modeling

Luis L. Fonseca, Lucas Böttcher, Borna Mehrad, Reinhard C. Laubenbacher

Methods | published 14 Jan 2025 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012138

Views: 416Citations: 0Saves: 0 • Shares: 1

Bayesian polynomial neural networks and polynomial neural ordinary differential equations

Colby Fronk, Jaewoong Yun, Prashant Singh, Linda Petzold

Research Article | published 10 Oct 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012414

Views: 947Citations: 1Saves: 2 • Shares: 1

A Physics-Informed Neural Network approach for compartmental epidemiological models

Caterina Millevoi, Damiano Pasetto, Massimiliano Ferronato

Research Article | published 05 Sep 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012387

Views: 2929Citations: 1Saves: 4 • Shares: 4

A low-dimensional approximation of optimal confidence

Pierre Le Denmat, Tom Verguts, Kobe Desender

Research Article | published 24 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012273

Views: 906Citations: 1Saves: 8 • Shares: 0

Kernel Bayesian logistic tensor decomposition with automatic rank determination for predicting multiple types of miRNA-disease associations

Yingjun Ma, Yuanyuan Ma

Research Article | published 08 Jul 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012287

Views: 662Citations: 0Saves: 0 • Shares: 0

Missing data in amortized simulation-based neural posterior estimation

Zijian Wang, Jan Hasenauer, Yannik Schälte

Research Article | published 17 Jun 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012184

Views: 850Citations: 1Saves: 0 • Shares: 0

Beyond homogeneity: Assessing the validity of the Michaelis–Menten rate law in spatially heterogeneous environments

Seolah Shin, Seok Joo Chae, Seunggyu Lee, Jae Kyoung Kim

Research Article | published 06 Jun 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012205

Views: 1153Citations: 2Saves: 6 • Shares: 7

Artificial neural networks for model identification and parameter estimation in computational cognitive models

Milena Rmus, Ti-Fen Pan, Liyu Xia, Anne G. E. Collins

Methods | published 15 May 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012119

Views: 3271Citations: 4Saves: 8 • Shares: 30

Validity conditions of approximations for a target-mediated drug disposition model: A novel first-order approximation and its comparison to other approximations

Jong Hyuk Byun, Hye Seon Jeon, Hwi-yeol Yun, Jae Kyoung Kim

Research Article | published 24 Apr 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1012066

Views: 1479Citations: 2Saves: 3 • Shares: 2

Evolutionary graph theory beyond pairwise interactions: Higher-order network motifs shape times to fixation in structured populations

Yang Ping Kuo, Oana Carja

Research Article | published 15 Mar 2024 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011905

Views: 1869Citations: 7Saves: 6 • Shares: 15

Steady-state approximations for Hodgkin-Huxley cell models: Reduction of order for uterine smooth muscle cell model

Shawn A. Means, Mathias W. Roesler, Amy S. Garrett, Leo Cheng, Alys R. Clark

Research Article | published 30 Aug 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011359

Views: 815Citations: 4Saves: 0 • Shares: 0

Evolutionary dynamics on sequential temporal networks

Anzhi Sheng, Aming Li, Long Wang

Research Article | published 07 Aug 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011333

Views: 1719Citations: 11Saves: 12 • Shares: 2

An approximate diffusion process for environmental stochasticity in infectious disease transmission modelling

Sanmitra Ghosh, Paul J. Birrell, Daniela De Angelis

Research Article | published 18 May 2023 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1011088

Views: 1386Citations: 3Saves: 12 • Shares: 13

Efficient inference and identifiability analysis for differential equation models with random parameters

Alexander P. Browning, Christopher Drovandi, Ian W. Turner, Adrianne L. Jenner, Matthew J. Simpson

Research Article | published 28 Nov 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010734

Views: 2061Citations: 12Saves: 12 • Shares: 24

Probabilistic program inference in network-based epidemiological simulations

Niklas Smedemark-Margulies, Robin Walters, Heiko Zimmermann, Lucas Laird, Christian van der Loo, Neela Kaushik, Rajmonda Caceres, Jan-Willem van de Meent

Research Article | published 07 Nov 2022 PLOS Computational Biology

https://doi.org/10.1371/journal.pcbi.1010591

Views: 2353Citations: 1Saves: 2 • Shares: 4

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