Microbes can use self-produced molecules to coordinate their actions and perform collective tasks. We present a mathematical model to describe the mechanism driving social motility in the gram-negative bacterium M. xanthus. Our model, which was confirmed by long-term colony expansion experiments, reveals that exopolysaccharide production allows the cells to move collectively across surfaces as a coherent group. Expansion of a M. xanthus colony incubated on a nutrient agar surface for 4 days at 32°C is shown in this stereo-microscope image. Patra et al.
Image Credit: Kimberley Kissoon and Heidi B. Kaplan
Editorials
Ten Simple Rules for Effective Statistical Practice
PLOS Computational Biology: published June 9, 2016 | https://doi.org/10.1371/journal.pcbi.1004961
Allostery: An Overview of Its History, Concepts, Methods, and Applications
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004966
Message from ISCB
Program Bytes: Satellite Meetings, SIGs, and AKEs at ISMB 2016
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004944
Education Articles
Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004937
Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers
PLOS Computational Biology: published June 9, 2016 | https://doi.org/10.1371/journal.pcbi.1004916
An Introduction to Programming for Bioscientists: A Python-Based Primer
PLOS Computational Biology: published June 7, 2016 | https://doi.org/10.1371/journal.pcbi.1004867
Perspective
The Context-Dependence of Mutations: A Linkage of Formalisms
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004771
Review
Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations
PLOS Computational Biology: published June 10, 2016 | https://doi.org/10.1371/journal.pcbi.1004746
Research Articles
Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data
PLOS Computational Biology: published June 30, 2016 | https://doi.org/10.1371/journal.pcbi.1004824
Conservation in Mammals of Genes Associated with Aggression-Related Behavioral Phenotypes in Honey Bees
PLOS Computational Biology: published June 30, 2016 | https://doi.org/10.1371/journal.pcbi.1004921
Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks
PLOS Computational Biology: published June 30, 2016 | https://doi.org/10.1371/journal.pcbi.1005009
Colony Expansion of Socially Motile Myxococcus xanthus Cells Is Driven by Growth, Motility, and Exopolysaccharide Production
PLOS Computational Biology: published June 30, 2016 | https://doi.org/10.1371/journal.pcbi.1005010
Constrained Allocation Flux Balance Analysis
PLOS Computational Biology: published June 29, 2016 | https://doi.org/10.1371/journal.pcbi.1004913
Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level
PLOS Computational Biology: published June 29, 2016 | https://doi.org/10.1371/journal.pcbi.1004993
Modeling Inter-trial Variability of Saccade Trajectories: Effects of Lesions of the Oculomotor Part of the Fastigial Nucleus
PLOS Computational Biology: published June 28, 2016 | https://doi.org/10.1371/journal.pcbi.1004866
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
PLOS Computational Biology: published June 28, 2016 | https://doi.org/10.1371/journal.pcbi.1004890
Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments
PLOS Computational Biology: published June 28, 2016 | https://doi.org/10.1371/journal.pcbi.1004998
Model Constrained by Visual Hierarchy Improves Prediction of Neural Responses to Natural Scenes
PLOS Computational Biology: published June 27, 2016 | https://doi.org/10.1371/journal.pcbi.1004927
Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering
PLOS Computational Biology: published June 27, 2016 | https://doi.org/10.1371/journal.pcbi.1005001
Competitive Dynamics in MSTd: A Mechanism for Robust Heading Perception Based on Optic Flow
PLOS Computational Biology: published June 24, 2016 | https://doi.org/10.1371/journal.pcbi.1004942
Computationally Efficient Implementation of a Novel Algorithm for the General Unified Threshold Model of Survival (GUTS)
PLOS Computational Biology: published June 24, 2016 | https://doi.org/10.1371/journal.pcbi.1004978
How to Estimate Epidemic Risk from Incomplete Contact Diaries Data?
PLOS Computational Biology: published June 24, 2016 | https://doi.org/10.1371/journal.pcbi.1005002
Prospective Coding by Spiking Neurons
PLOS Computational Biology: published June 24, 2016 | https://doi.org/10.1371/journal.pcbi.1005003
Genes as Cues of Relatedness and Social Evolution in Heterogeneous Environments
PLOS Computational Biology: published June 24, 2016 | https://doi.org/10.1371/journal.pcbi.1005006
Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004728
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004809
Electrophysiology of Heart Failure Using a Rabbit Model: From the Failing Myocyte to Ventricular Fibrillation
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004968
Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004985
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
PLOS Computational Biology: published June 23, 2016 | https://doi.org/10.1371/journal.pcbi.1004989
Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases
PLOS Computational Biology: published June 22, 2016 | https://doi.org/10.1371/journal.pcbi.1004926
A Mathematical Model of Neonatal Rat Atrial Monolayers with Constitutively Active Acetylcholine-Mediated K+ Current
PLOS Computational Biology: published June 22, 2016 | https://doi.org/10.1371/journal.pcbi.1004946
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
PLOS Computational Biology: published June 21, 2016 | https://doi.org/10.1371/journal.pcbi.1004957
Filopodial-Tension Model of Convergent-Extension of Tissues
PLOS Computational Biology: published June 20, 2016 | https://doi.org/10.1371/journal.pcbi.1004952
The Computational Development of Reinforcement Learning during Adolescence
PLOS Computational Biology: published June 20, 2016 | https://doi.org/10.1371/journal.pcbi.1004953
Roles for Coincidence Detection in Coding Amplitude-Modulated Sounds
PLOS Computational Biology: published June 20, 2016 | https://doi.org/10.1371/journal.pcbi.1004997
Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities
PLOS Computational Biology: published June 17, 2016 | https://doi.org/10.1371/journal.pcbi.1004986
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004753
Learning Universal Computations with Spikes
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004895
Predicting Achievable Fundamental Frequency Ranges in Vocalization Across Species
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004907
Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004956
Mechanistic Mathematical Modeling Tests Hypotheses of the Neurovascular Coupling in fMRI
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004971
Graded, Dynamically Routable Information Processing with Synfire-Gated Synfire Chains
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004979
Formal Models of the Network Co-occurrence Underlying Mental Operations
PLOS Computational Biology: published June 16, 2016 | https://doi.org/10.1371/journal.pcbi.1004994
Adaptive Spike Threshold Enables Robust and Temporally Precise Neuronal Encoding
PLOS Computational Biology: published June 15, 2016 | https://doi.org/10.1371/journal.pcbi.1004984
Progression of Diabetic Capillary Occlusion: A Model
PLOS Computational Biology: published June 14, 2016 | https://doi.org/10.1371/journal.pcbi.1004932
Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved
PLOS Computational Biology: published June 13, 2016 | https://doi.org/10.1371/journal.pcbi.1004964
Deciphering Dimerization Modes of PAS Domains: Computational and Experimental Analyses of the AhR:ARNT Complex Reveal New Insights Into the Mechanisms of AhR Transformation
PLOS Computational Biology: published June 13, 2016 | https://doi.org/10.1371/journal.pcbi.1004981
Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity
PLOS Computational Biology: published June 13, 2016 | https://doi.org/10.1371/journal.pcbi.1004983
Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure
PLOS Computational Biology: published June 13, 2016 | https://doi.org/10.1371/journal.pcbi.1004987
Reservoir Computing Properties of Neural Dynamics in Prefrontal Cortex
PLOS Computational Biology: published June 10, 2016 | https://doi.org/10.1371/journal.pcbi.1004967
Theory and Experimental Validation of a Spatio-temporal Model of Chemotherapy Transport to Enhance Tumor Cell Kill
PLOS Computational Biology: published June 10, 2016 | https://doi.org/10.1371/journal.pcbi.1004969
The Evolutionary Origins of Hierarchy
PLOS Computational Biology: published June 9, 2016 | https://doi.org/10.1371/journal.pcbi.1004829
Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations
PLOS Computational Biology: published June 8, 2016 | https://doi.org/10.1371/journal.pcbi.1004904
Towards Identifying and Reducing the Bias of Disease Information Extracted from Search Engine Data
PLOS Computational Biology: published June 6, 2016 | https://doi.org/10.1371/journal.pcbi.1004876
Interplay between Graph Topology and Correlations of Third Order in Spiking Neuronal Networks
PLOS Computational Biology: published June 6, 2016 | https://doi.org/10.1371/journal.pcbi.1004963
Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space
PLOS Computational Biology: published June 6, 2016 | https://doi.org/10.1371/journal.pcbi.1004970
FamPipe: An Automatic Analysis Pipeline for Analyzing Sequencing Data in Families for Disease Studies
PLOS Computational Biology: published June 6, 2016 | https://doi.org/10.1371/journal.pcbi.1004980
Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits
PLOS Computational Biology: published June 3, 2016 | https://doi.org/10.1371/journal.pcbi.1004958
The Role of Adaptation in Bacterial Speed Races
PLOS Computational Biology: published June 3, 2016 | https://doi.org/10.1371/journal.pcbi.1004974
Evolution-Based Functional Decomposition of Proteins
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004817
Predicting Allosteric Effects from Orthosteric Binding in Hsp90-Ligand Interactions: Implications for Fragment-Based Drug Design
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004840
Non-degradative Ubiquitination of Protein Kinases
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004898
EGFR Signal-Network Reconstruction Demonstrates Metabolic Crosstalk in EMT
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004924
Theoretical Insights into the Biophysics of Protein Bi-stability and Evolutionary Switches
PLOS Computational Biology: published June 2, 2016 | https://doi.org/10.1371/journal.pcbi.1004960
Validated Predictions of Metabolic Energy Consumption for Submaximal Effort Movement
PLOS Computational Biology: published June 1, 2016 | https://doi.org/10.1371/journal.pcbi.1004911
Stochastic Simulation of Biomolecular Networks in Dynamic Environments
PLOS Computational Biology: published June 1, 2016 | https://doi.org/10.1371/journal.pcbi.1004923