Peer Review History
| Original SubmissionJanuary 4, 2024 |
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Dear %TITLE% Mezey, Thank you very much for submitting your manuscript "Visual social information use in collective foraging" for consideration at PLOS Computational Biology. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. Four experts have reviewed your submission and agree that this is an important contribution to the collective forage literature. I agree with them and would like to invite you to resubmit a revised version of the manuscript that addresses all the comments made by the four reviewers. In going through the reports, I found especially important that you strengthen the discussion of how your results depart from those obtained using simpler models (comment #11 by Rev. 3) and also that you explore in more detail how sensitive your results are to changes in the resource density (ideally performing a sensitivity analysis unless you show it is not needed). We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent to reviewers for further evaluation. When you are ready to resubmit, please upload the following: [1] A letter containing a detailed list of your responses to the review comments and a description of the changes you have made in the manuscript. Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. [2] Two versions of the revised manuscript: one with either highlights or tracked changes denoting where the text has been changed; the other a clean version (uploaded as the manuscript file). Important additional instructions are given below your reviewer comments. Please prepare and submit your revised manuscript within 60 days. If you anticipate any delay, please let us know the expected resubmission date by replying to this email. Please note that revised manuscripts received after the 60-day due date may require evaluation and peer review similar to newly submitted manuscripts. Thank you again for your submission. We hope that our editorial process has been constructive so far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments. Sincerely, Ricardo Martinez-Garcia Academic Editor PLOS Computational Biology Zhaolei Zhang Section Editor PLOS Computational Biology *********************** Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: In their manuscript ”Visual social information use in collective foraging”, the authors simulate an agent-based model of social particles in search for patches of resources, with an increasing level of complexity. Each searcher can be in either an exploration state, a social relocation state or a exploitation state, and it switches between these states based on the information it collects along its trajectory, both from its own exploration and from the observation of other agents' behavior. The authors first quantify the search efficiency as a function of the sensitivity to social stimuli in an idealized setting with optimal vision, and then refine their findings by studying the effect of visual occlusion, restricted field of view and collisions with other agents. They find that these latter effects modify substantially the results in the idealized case and argue that optimal strategies, and in particular the optimal social sensitivity, depend greatly on such physical constraints are a trade-off between various phenomena. Overall, the manuscript is very interesting, well written and perfectly relevant for the current state of the art. The warning the authors make on the fragility of optimal search strategies derived in idealized scenarios when one adds realistic constraints is particularly significant. However, my main negative comment on the manuscript is that most of the quantities that are used are not defined properly in the main text. I understand that the details are reported in the supplemental material, but it is very frustrating to have absolutely no quantitative definition of the model in the main text. This gives an impression of vagueness for the reader and I strongly believe that some mathematical details should be added in section 1. Here are the main ones missing, to my opinion: - In the exploration state, the agents is said to perform a "random walk", but it should be a bit more explicit. The authors mention 25000 time steps in their simulations, but what is a time step here ? - How do u(t) and w(t) evolve ? We can see in figure 1)c) that w increases smoothly, but not u, why is that ? And how are their threshold values decided ? - How is \\epsilon_w defined? This is a crucial quantity in the entire manuscript and there is no clear definition of it in the main text. Again, I understand that it is in the supplemental material, but there should be more details on it in the main text. - How is the search efficiency defined ? Is it related to the number of patches exploited by the end of the simulation ? Or is it a typical timescale ? The definition of search efficiency is an important question in all papers on search/foraging, it should be clearer here. To address this problem, I suggest that the authors add a section before the Results section where they properly introduce the model. This would help a lot the reading experience and allow the reader to understand more profoundly the results shown later in the manuscript. I also add other comments and questions. - What is the size of the simulation box with respect to the size of the agents and/or of their visual perception radius ? Could the authors express the number of agents and patches in terms of their density or packing fraction ? - How does the rate of exploitation of resources impact the results ? Could the author authors discuss this, at least qualitatively ? Reviewer #2: The paper is well written. The results are clearly described, specifically the demonstrative simulation frames of different scenarios provide great insights. Methods are properly documented. My main remark is that across all simulations, the total number of resource units in the environment remains constant. While the authors varied between “patchy” and “uniform” environments, it would be equally interesting to see the results for “dense”(high) and “sparse” (low) environments (based on the total number of resources). In relation to that, when exploring sparse environments, it is usually beneficial to implement an adaptive random walk : “Nauta, Johannes, et al. "Enhanced foraging in robot swarms using collective lévy walks." 24th European Conference on Artificial Intelligence (ECAI). Vol. 325. IOS, 2020.” As relevant citations, the authors may include this paper, as it also highlights how physical constraints (avoiding collisions) on the individual-level enhances the collective foraging performance. Results 1.1 (Fig 2) I would prefer if the x-axis shows the patch density instead of the number of patches, since this is related to the environment size. It is unclear to me where the “transition” from a “patchy” to a “uniform” environment occurs. If this solely happens by increasing the number of patches, then this means the total amount of resources is constant throughout these experiments? I see this is stated in the Methods but while reading the Results this is confusing to me. I prefer a different variable than “number of patches” to make the transition clear. Results 1.2 (Fig 3) Confusing labels of the columns like “Patch environment NA=3” while the row indicates NA=5 The “absolute search efficiency” is shown here, while in Fig 2 the “collective search efficiency” is measured (but the label shows “relative search efficiency”). What are the differences between these? How is the value of L decided? Is it inspired by certain animal parameters? In general, the labels in some Figures are relatively small and hard to read Reviewer #3: review is uploaded as an attachment Reviewer #4: The paper is well-written and fills an essential gap in the area. I just recommend a very careful style review since there are some redaction mistakes (e.g. lines 45-47 pg 2). Also, it would improve the reading if the authors homogenized the way they make citations (e.g. line 487 pg. 15). ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes Reviewer #3: Yes Reviewer #4: Yes ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. 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| Revision 1 |
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Dear %TITLE% Mezey, We are pleased to inform you that your manuscript 'Visual social information use in collective foraging' has been provisionally accepted for publication in PLOS Computational Biology. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Computational Biology. Best regards, Ricardo Martinez-Garcia Academic Editor PLOS Computational Biology Zhaolei Zhang Section Editor PLOS Computational Biology *********************************************************** Reviewer's Responses to Questions Comments to the Authors: Please note here if the review is uploaded as an attachment. Reviewer #1: The authors have taken my comments into account. The details of the models added to the main text provides essential information to the reader without flooding them with mathematical details. Overall the manuscript is very well written and the results are significant for the current state of the art on collective foraging. Reviewer #3: Thank you for addressing my comments and for answering them in detail. The model is very thorough and well thought out, it will be a great contribution to the problem of collective foraging. ********** Have the authors made all data and (if applicable) computational code underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data and code underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data and code should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data or code —e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #3: None ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #3: No |
| Formally Accepted |
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PCOMPBIOL-D-24-00015R1 Visual social information use in collective foraging Dear Dr Mezey, I am pleased to inform you that your manuscript has been formally accepted for publication in PLOS Computational Biology. Your manuscript is now with our production department and you will be notified of the publication date in due course. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Soon after your final files are uploaded, unless you have opted out, the early version of your manuscript will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting PLOS Computational Biology and open-access publishing. We are looking forward to publishing your work! With kind regards, Anita Estes PLOS Computational Biology | Carlyle House, Carlyle Road, Cambridge CB4 3DN | United Kingdom ploscompbiol@plos.org | Phone +44 (0) 1223-442824 | ploscompbiol.org | @PLOSCompBiol |
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