46 Node Features: 1 : 1 if the node is the focus residue, 0 otherwise 2 : 1 if residue is A, 0 otherwise 3 : 1 if residue is C, 0 otherwise 4 : 1 if residue is D, 0 otherwise 5 : 1 if residue is E, 0 otherwise 6 : 1 if residue is F, 0 otherwise 7 : 1 if residue is G, 0 otherwise 8 : 1 if residue is H, 0 otherwise 9 : 1 if residue is I, 0 otherwise 10 : 1 if residue is K, 0 otherwise 11 : 1 if residue is L, 0 otherwise 12 : 1 if residue is M, 0 otherwise 13 : 1 if residue is N, 0 otherwise 14 : 1 if residue is P, 0 otherwise 15 : 1 if residue is Q, 0 otherwise 16 : 1 if residue is R, 0 otherwise 17 : 1 if residue is S, 0 otherwise 18 : 1 if residue is T, 0 otherwise 19 : 1 if residue is V, 0 otherwise 20 : 1 if residue is W, 0 otherwise 21 : 1 if residue is Y, 0 otherwise 22 : Phi of the given residue, measured in radians. Spans from -pi to pi 23 : Psi of the given residue, measured in radians. Spans from -pi to pi 24 : Sine of chi angle number 1 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 25 : Cosine of chi angle number 1 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 26 : Sine of chi angle number 2 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 27 : Cosine of chi angle number 2 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 28 : Sine of chi angle number 3 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 29 : Cosine of chi angle number 3 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 30 : Sine of chi angle number 4 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 31 : Cosine of chi angle number 4 of each residue. Spans from -1 to 1, 0 if chi angle is not valid for this residue 32 : fa_atr onebody term using ref2015 33 : fa_rep onebody term using ref2015 34 : fa_sol onebody term using ref2015 35 : fa_intra_rep onebody term using ref2015 36 : fa_intra_sol_xover4 onebody term using ref2015 37 : lk_ball_wtd onebody term using ref2015 38 : fa_elec onebody term using ref2015 39 : pro_close onebody term using ref2015 40 : hbond_bb_sc onebody term using ref2015 41 : omega onebody term using ref2015 42 : fa_dun onebody term using ref2015 43 : p_aa_pp onebody term using ref2015 44 : yhh_planarity onebody term using ref2015 45 : ref onebody term using ref2015 46 : rama_prepro onebody term using ref2015 28 Edge Features: 1 : 1.0 if the two residues are polymer-bonded, 0.0 otherwise (symmetric) 2 : Euclidean distance between the CA atoms of each residue, measured in Angstroms (symmetric) 3 : Euclidean distance between the two CB atoms of each residue, measured in Angstroms (symmetric) 4 : CA-CB-CB-CA torsion angle in radians, spans from -pi to pi (symmetric) 5 : N1-CA1-CB1-CB2 torsion angle in radians, spans from -pi to pi (asymmetric) 6 : CA1-CB1-CB2 bond angle in radians, spans from 0 to pi (asymmetric) 7 : Natural Log of the sequence distance between the two residues (i.e., number of residues between these two residues in sequence space, plus one). -1.0 if the two residues belong to different chains. (symmetric) 8-10 : Translation vector for the Rosetta jump. Distances are measured in Angstroms (asymmetric) 11-13 : Euler angles for the Rosetta jump (asymmetric) 14 : Total number of backbone-backbone hydrogen bonds (symmetric) 15 : Total number of backbone-sidechain hydrogen bonds (symmetric) 16 : Total number of sidechain-sidechain hydrogen bonds (symmetric) 17 : Number of hydrogen bonds in which the first residue is the donor (asymmetric) 18 : Number of hydrogen bonds in which the first residue is the acceptor (asymmetric) 19 : fa_atr twobody term using ref2015 (symmetric) 20 : fa_rep twobody term using ref2015 (symmetric) 21 : fa_sol twobody term using ref2015 (symmetric) 22 : lk_ball_wtd twobody term using ref2015 (symmetric) 23 : fa_elec twobody term using ref2015 (symmetric) 24 : hbond_sr_bb twobody term using ref2015 (symmetric) 25 : hbond_lr_bb twobody term using ref2015 (symmetric) 26 : hbond_bb_sc twobody term using ref2015 (symmetric) 27 : hbond_sc twobody term using ref2015 (symmetric) 28 : dslf_fa13 twobody term using ref2015 (symmetric) These attributes can be reproduced with the following python code ``` # pip install menten-gcn import menten_gcn as mg data_maker = mg.published.Maguire_Grattarola_2021() data_maker.summary() # This check ensures that the data_maker gives the expected values data_maker.run_consistency_check() # Visit https://menten-gcn.readthedocs.io/ to see # how to use this data_maker with your protein ```