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VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

Table 2

External validation of VAMPr prediction model.

The external dataset includes 31 Escherichia coli, 24 Klebsiella pneumoniae and 21 Pseudomonas aeruginosa isolates. All isolates were tested against 3 antibiotics (cefepime, ceftazidime and meropenem). We reported the accuracy as the fraction of correct predictions, and the AUROC (area under the receiver operator curve) represents the area under the operator-receiver characteristic. The AUROC value is n/a for E. cloacae as all 13 isolates are susceptible to meropenem.

Table 2

doi: https://doi.org/10.1371/journal.pcbi.1007511.t002