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VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

Fig 1

Overview of the VAMPr workflow.

The VAMPr pipeline processed sequence data from the NCBI Short Read Achieve (SRA) and NCBI BioSample Antibiograms for phenotypes. The curated AMR genotypes and AMR phenotypes were used to create both association and prediction models.

Fig 1