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Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

Fig 5

Bayesian tree based on [Cyto28-more] dataset.

It contains peptides with a length higher or equal than 28 amino acids obtained from cytoplasmic. Bayesian analysis was performed in two independent runs using four Markov chains and 1,000,000 generations [58]. A majority-rule consensus tree (50%) was obtained after discarding the initial 25% of the trees and only support above 60% is shown. The leaf labels refer to the current NCBI nomenclature, whereas the BCG groups represent the recently revised names [12].

Fig 5