Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
It contains peptides with a length higher or equal than 28 amino acids obtained from cytoplasmic. Bayesian analysis was performed in two independent runs using four Markov chains and 1,000,000 generations . A majority-rule consensus tree (50%) was obtained after discarding the initial 25% of the trees and only support above 60% is shown. The leaf labels refer to the current NCBI nomenclature, whereas the BCG groups represent the recently revised names .