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NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes

Fig 2

Benchmark of runtimes for NINJA compared to USEARCH 8 in a single-threaded environment.

Multi-threaded alignments are faster. For NINJA only, this represents the entire time from parsing the initial FASTA file to the completion of the OTU table. The sortMeRNA program took substantially longer than USEARCH 8 (approx. 8000s; bar not shown to preserve scale).

Fig 2