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BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Figure 1

A complete model with six sequences, HKY substitution model, strict clock, Yule tree prior, a number of operators, mainly on the tree, and a few loggers to produce output to a trace file, a tree log and screen output.

Note the explicit existence of a State object.

Figure 1

doi: https://doi.org/10.1371/journal.pcbi.1003537.g001