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Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

Figure 2

Kernel density estimates of the distribution of (solid line), (red shaded region) and the time of the earliest CXCR4-using ancestor (defined at FPR3.5; solid region) based on molecular clock analyses of HIV sequence variation from each subject.

Double vertical lines indicate the time of the earliest sample per patient.

Figure 2

doi: https://doi.org/10.1371/journal.pcbi.1002753.g002