Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures
Figure 18
Comparison of Transat (top figure) and RNAalifold P (bottom figure) for the Cripavirus internal ribosomal entry site (IRES), RF00458.
Transat predicts the helices of the pseudo-knotted known structure correctly and also predicts several new helices, whereas RNAalifold P captures only part of the known structure and predicts three new base-pairs which extend three known helices, see also Figure 10. Please refer to the caption of Figure 16 for more information on these arc-plots.