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Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures

Figure 10

Conserved helices predicted by Transat for the trp-attenuator data set as function for a p-value threshold of .

The x-axis represents the trp-attenuator alignment, see the text or the caption of Figure 9 for more information on arc-plots. Transat predicts almost all base-pairs of the known structure correctly as well as several equally significant conserved helices which may guide the formation of the known structure.

Figure 10